PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015019.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 387aa    MW: 42601.6 Da    PI: 6.4552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015019.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33194252159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+
  Pbr015019.1 194 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSTVVTTYEGQHTHP 252
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-35179254IPR003657WRKY domain
SuperFamilySSF1182905.75E-30186254IPR003657WRKY domain
PROSITE profilePS5081133.315189254IPR003657WRKY domain
SMARTSM007741.1E-40194253IPR003657WRKY domain
PfamPF031062.1E-27195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDGREEKLKT TDRSNSMANS AVFSDEIPTN FPSFSGIFDL PSSCEDQKGS LGGFMDLLGI  60
PDYAPSLFDF PQTTSSLMMM PPHHNQQESL PSPASTSTVV ALPERESATT TNTTSEVLNS  120
STAPTTPNSS SISSSSNEAG ANNNEGQMTK VQEEEADEQD PEKTQKQLKP KKKNQKRQRE  180
PRFAFMTKSE VDNLDDGYRW RKYGQKAVKN SPYPRSYYRC TTAGCGVKKR VERSSDDPST  240
VVTTYEGQHT HPSPITPRGT MGIAPLPHQS TGFISAAEAS SNPFGVQQCL PHHHHYQQQQ  300
QHQYAYMYQS SPSLNISSST YGGGAGGGPF NPSSFSTSLL QERYNFEGPP SSSSATNFLR  360
DHGLLQDIVP QIRKEPKEED HHHQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30184254777Probable WRKY transcription factor 4
2lex_A2e-30184254777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015019.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6095905e-70JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBankJQ0812665e-70JQ081266.1 Gossypium hirsutum WRKY5 transcription factor (WRKY5) mRNA, complete cds.
GenBankKF6698555e-70KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372109.10.0PREDICTED: probable WRKY transcription factor 48 isoform X1
SwissprotQ9FGZ42e-58WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLD9ZJG10.0D9ZJG1_MALDO; WRKY domain class transcription factor
STRINGXP_009372109.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-50WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]