PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014832.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 473aa    MW: 50295 Da    PI: 8.3525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014832.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-124873227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C++++rtG+C yG+rC+++H++
  Pbr014832.1 48 DEADCSYYLRTGICGYGSRCRYNHPR 73
                 6799********************96 PP
2zf-CCCH41.62e-1395119327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtCk+G++CkF+H++
  Pbr014832.1  95 QPVCQYYMRTGTCKFGASCKFHHPK 119
                  689********************96 PP
3zf-CCCH331e-10139165127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++ +tG+Ck+ ++CkF+H++
  Pbr014832.1 139 PGERECSYYVKTGQCKFSATCKFHHPQ 165
                  5789*********************97 PP
4zf-CCCH38.91.4e-12300326127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H+p
  Pbr014832.1 300 PGQPECQYYMRTGDCKFGSSCRYHHPP 326
                  5789*********************97 PP
5zf-CCCH34.82.7e-11348371326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +lC ++++ G Ck+G+ CkF H+
  Pbr014832.1 348 APLCTHYQQRGACKFGPACKFDHP 371
                  68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0334674IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-54673IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-64975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99592120IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-792119IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1195119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-697118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582138166IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4138165IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6299326IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5305327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6345372IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9348371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5349375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5350370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MERYGRAAEG SQSDPPPEWN FPEPETRLEE SMWPLGLRPG ESYPERPDEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSTVTG AARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKFHHPKQ  120
GGSSGSPVSL NYYGYPLRPG ERECSYYVKT GQCKFSATCK FHHPQPAGIQ LPVPSPAPQV  180
SPVPATHTLY QTAQSPSVSS QQYGVVFARP PLLQGSYVPS PYGQVLLSPG TIPFPGWNPY  240
QTQASQLPSS AQPGVGSGTL YTQLSPSAPA YTGMYQPIPL PSSFGLPTTS QKELSFPERP  300
GQPECQYYMR TGDCKFGSSC RYHHPPEAVQ PKTTVVLSSS GLPSRPGAPL CTHYQQRGAC  360
KFGPACKFDH PIGTLSYSSS TSSLADMPVA PYPVGSSIGT LAPSSASSEL RPELSSSSGK  420
ELVSARMSSS LSTSSGSVGS TVSKGGVTPM GVQQSSQGSG PSVGSGNNTE SQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352233.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-156C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A498I9Z30.0A0A498I9Z3_MALDO; Uncharacterized protein
STRINGXP_009352233.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-147C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]