PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014789.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 800aa    MW: 89772.5 Da    PI: 7.3034
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014789.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.52.8e-36116192177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqv++C +d++e+k yhrrh+vC ++++a +v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k 
  Pbr014789.1 116 RCQVPSCGVDIKELKGYHRRHRVCLACANAITVVIDGETKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRRRKP 192
                  6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-28110178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.086114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-33115195IPR004333Transcription factor, SBP-box
PfamPF031107.6E-27117191IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MEIQPPLPSD DNSTVWDWGD LLDFTVDDDL SISWGSAENP DPEVGPAPER PPEDPNLNSS  60
RIRKRDPRLV CSNFLAGHIP CACPEADARM MELEEEEAGH GKKRVKTGRA PTGTARCQVP  120
SCGVDIKELK GYHRRHRVCL ACANAITVVI DGETKRYCQQ CGKFHVLPDF DEGKRSCRRK  180
LERHNNRRRR KPSDYKGASG KESQKENQTE ETNFDGGATE DSLQLSSQLN EKEELLESEG  240
GRTLILCSVP ESQNVHSDSV VSVMASGETQ KDARKHDSNN SLSPPNCDNK SYSSMCPTGR  300
ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC TILTVFIAMP KFMWMKLLED  360
PVSYIHEFVA VPGKMLSGRG NILIYLSDMI FRVVKDGTSV IKKKVEVRAP RLHYVHPTFF  420
EAGKPMEFVA CGKSKLLSHK LLNKDLYGYR FLVSFSGKYL AYNYSPPSSH SQIEGDTASN  480
FDHQLCKIQV PQTDADCFGP AFIEIENESG LSNFIPVLIG DKEVCAEMKT IQNRYEESFS  540
SQGLHCSFSG SLSNSCEASS LRHKAFSEVI LDIAWLLKQP SSENFQQIMT ASQIQRFNYL  600
FNFLISIKST TILDKVLQNL EILMAKMELN TAINGSTDAD MRLLQNYMNY TRDLLCKKFE  660
CSVRLVKKED LVSQSQTCFQ NDVKLVAPFH CQDTEITVDG RLGVIVGSTS DERSETVPLL  720
SKKAVGKANL TKELPSVVKC YTSGEVLRSR SGGMFLRFRP TLLVISATAI CVGFCAVLIH  780
PHKVGEFAVT IRRCLFDKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A9e-41114199388squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177189RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352182.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A498IDY60.0A0A498IDY6_MALDO; Uncharacterized protein
STRINGXP_009352182.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7