PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014690.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 819aa    MW: 90263.2 Da    PI: 6.5949
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014690.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.6e-16500538240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Pbr014690.1 500 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 538
                  689**********************************96 PP
2TCR50.83.3e-16585624140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Pbr014690.1 585 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTF 624
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17499540IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903500625IPR005172CRC domain
PfamPF036381.6E-11502537IPR005172CRC domain
SMARTSM011141.3E-17585626IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11587623IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHIT QTFSSLSFAS LPSVFTSPHV  60
SSHKESRFLR RHNPSDPSKP ESSLESGNKV SANEDAAELC INSAELHEDC VPGDSIGEAS  120
VEPSSEHSKF VIELPRNLKY DCGSPECGAT NRGTEAGCES EAADLSAPLV PYVQKTSENG  180
SSDDGVHLQN ICQSEQRNEL TGCDWESLIS DASDLLIFNS PNGSEAFRGI MQNPLDSVTR  240
FCNSLMPRLS QNEINDEQNV LVLDTVVSRE QPETEDPSSQ YGEASQPEDT ELMQQDHLNN  300
CMVSSQIEKE NNKVEAPMQF NCKPGLNLHR GLRRRCLDFE MVGARRKSLD NVPNSSSSML  360
SQSDEKITTN DKQLVPMKPG GESARCILPG IGLHLNALAT TSKDYKTIKR ENMAYGRQLS  420
LPNLTAPANS PTAGQGPGHE SFSSASSERD MDGTENGVQL LQDASQEPAF LANEEFNQNS  480
PKKKRHVLPK FEQAEEAESS CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQECFNKPIH  540
EDTVLATRKQ IESRNPLAFA PKVIRNADPV PEYGEESSKT PASARHKRGC NCKKSSCLKK  600
YCECYQGGVG CSISCRCEGC KNTFGRKDAC LPIVFIFVPY SFGIQGLLWE QKPRQMKKKQ  660
KHAERERLXX XXKSAAENYQ QKNEIQENEE QRQDSALPTT PLRLSRQLVS LPFSSKNKPP  720
RSSVFSIGPS SGLYTGQKLG ILRPETKFES HIQTVPEDEM PEILQGDGSP STGIKTASPN  780
GKRVCPPNRE FAPSPGRRAG RKLILQSIPS FPSLTPQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1750462214120Protein lin-54 homolog
5fd3_B5e-1750462214120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371959.10.0PREDICTED: LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A498HL320.0A0A498HL32_MALDO; Uncharacterized protein
STRINGXP_009371959.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-152TESMIN/TSO1-like CXC 2