PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr014670.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 347aa MW: 40284.1 Da PI: 4.9594

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014670.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	118.2	4.7e-37	24	116	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+i++d+++++++sws+++nsfvvld+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++ weF+++ F +g+k+ll++i+ Pbr014670.1 24 FLAKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGQKHLLKNIR 111 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Pbr014670.1 112 RRKAS 116 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.6E-40	19	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.81E-36	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-60	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.7E-32	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-20	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-20	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.5E-20	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNLDQDPDHP LPLERLYDQG PPPFLAKTYD IVDDPSTNHI VSWSRDNNSF VVLDPNSFSM 60 SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANEAFL RGQKHLLKNI RRRKASHLPQ 120 ASQKTLDSCV EVGRFGLDIE IDQLRRDKQV LMGELVKLRQ QQQANRVYLQ GMEDRLKRTE 180 LKQQHMLSFL ARAMQNPNFV QQLSQQKDLR KELEKAVTKK RRRTIEQGPS NVEVDELGHV 240 GIETYVKVKP QEYGDISDQF EVSELDQFAI DMPGVSRSQN VHGDQECIER DEEHEGRGKD 300 LDKGYWQELF NENIDEEIGL VGVQEEDEED VNVLIEELGF LAPSPK*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNLDQDPDHP LPLERLYDQG PPPFLAKTYD IVDDPSTNHI VSWSRDNNSF VVLDPNSFSM  60
SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANEAFL RGQKHLLKNI RRRKASHLPQ  120
ASQKTLDSCV EVGRFGLDIE IDQLRRDKQV LMGELVKLRQ QQQANRVYLQ GMEDRLKRTE  180
LKQQHMLSFL ARAMQNPNFV QQLSQQKDLR KELEKAVTKK RRRTIEQGPS NVEVDELGHV  240
GIETYVKVKP QEYGDISDQF EVSELDQFAI DMPGVSRSQN VHGDQECIER DEEHEGRGKD  300
LDKGYWQELF NENIDEEIGL VGVQEEDEED VNVLIEELGF LAPSPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-26	22	116	18	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014670.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009371966.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-121	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A498HGN3	0.0	A0A498HGN3_MALDO; Uncharacterized protein
STRING	XP_009371966.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1100	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-123	heat shock transcription factor A6B