PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014639.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 905aa    MW: 99613.5 Da    PI: 6.7988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014639.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.4e-18326425198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +
  Pbr014639.1 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIM 421
                  89**************************555567778***************9989999999***9.********************876.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Pbr014639.1 422 GFRK 425
                  7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-29318430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-18323425IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-21324425No hitNo description
PfamPF023622.5E-15326425IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138326427IPR003340B3 DNA binding domain
SMARTSM010191.8E-19326427IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128590640IPR011124Zinc finger, CW-type
PfamPF074968.3E-12595637IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MERRTCMNAA CGTSTSIEWK RGWALRSGGF ANLCLKCWSA YEQSIYCDVF HSNESGWREC  60
GVCGMRLHCG CIASTLLLDL LDGGGVKCIK CAKDSGPHPI SSDEKPDGLG TPKMSELQSN  120
ITNNQLDGHS VEKLKLVQLG NNKDCNGLMN LLQLRNNDTK GLMLKWKHDE VPPPGGEIGG  180
TCFSNFNQAS NGSAEASTAE AFKANLGINN LYESLPRTNL SMTLGSPLGK ENPFPSAIVD  240
EGEHSMTSSP LPPGARSRHL FPKPPKLALS TGLEENSTMV SHARVARPPA EGRGRNQLLP  300
RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG  360
LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI  420
MGFRKASNTV SMQDTHLTAI QNGPHSSETL FSGVFENLPV ISGYPGLLQS LKGSIDPHLN  480
ALSKHLTTAS GDISWNKTEK QEGRTTEGLL MPSLVPERKR TRNIGSKSKR LLIDSQDALE  540
LKLTWEEAQD LLRPPPASKP STVVIEDLEF EEYEEPPVFG KRSIFTVRST GEQEQWVQCD  600
SCSKWRRLPA DALLSSKWIC ADNAWDRSRS LCSIPDELSP RELENFLRMC KESKKRRIVA  660
DPRPTPEHEA SGLDALANAA ILGDSVANPE AASVATTTKH PRHRPGCSCI VCIQPPSGKG  720
KHKPTCTCNV CMTVKRRFKT MMINKKKRQS EREAEIAYRS QHTWNPRDEA EVDSTSRLVS  780
SHVDPSDNKA KSANESETKS QSKLAETGKG ILDLNSHPGR EGDLQAGPDH VSMISLVQVA  840
TLPLETYMKH NGITSLISEQ QESSTSHVPP QAANETEEQL DENRCPEQES GGEERPDKSQ  900
DDPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-703044332131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014639.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372020.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_009372021.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_018506406.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A498IIW50.0A0A498IIW5_MALDO; Uncharacterized protein
STRINGXP_009372020.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]