PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr014594.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 511aa MW: 56133.8 Da PI: 6.4603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014594.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	206	247	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Pbr014594.1 206 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 247 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-7	202	249	No hit	No description
SMART	SM00338	7.7E-7	203	266	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	205	249	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	206	248	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	207	249	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-31	288	363	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MAASHRVGDA TAATATATTA GLSSELGPSN HHVPYAVLHG MNASSTSFIN QEGSAFDFGE 60 LEEAIARQVR NDEAQAPLFT GGGGAGRPAA TLEMFPSWPM RFHQTPGGSS KSGEEESTDS 120 GSQVNTLTTT TTNQLELEPE SPMSKNPSSS QAAFDQKHLQ FQQQQQQQEM AISDTGPNSQ 180 TPSAQKPSQE KRKGAGSTSE NKQLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL 240 TQLEQDLQRA RAQGLFLGGC GGGLGNISSG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL 300 SDSDLRLVVD VYVSHYDEIF QLKGMAAKSD VFHLITGMWT TPAERCFLWM GGFRPSELIK 360 MLIAQLDPLT EQQFMGIYNL QQSSQQGEEA LTQGLEQLHQ SLVDTIAGGP VIDGMQQMAV 420 ALGKLTNLEG FVRQADNLRQ QTLHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP 480 RETMISDDNS CQTTTDLQML HPSQNHFASF *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MAASHRVGDA TAATATATTA GLSSELGPSN HHVPYAVLHG MNASSTSFIN QEGSAFDFGE  60
LEEAIARQVR NDEAQAPLFT GGGGAGRPAA TLEMFPSWPM RFHQTPGGSS KSGEEESTDS  120
GSQVNTLTTT TTNQLELEPE SPMSKNPSSS QAAFDQKHLQ FQQQQQQQEM AISDTGPNSQ  180
TPSAQKPSQE KRKGAGSTSE NKQLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL  240
TQLEQDLQRA RAQGLFLGGC GGGLGNISSG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL  300
SDSDLRLVVD VYVSHYDEIF QLKGMAAKSD VFHLITGMWT TPAERCFLWM GGFRPSELIK  360
MLIAQLDPLT EQQFMGIYNL QQSSQQGEEA LTQGLEQLHQ SLVDTIAGGP VIDGMQQMAV  420
ALGKLTNLEG FVRQADNLRQ QTLHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP  480
RETMISDDNS CQTTTDLQML HPSQNHFASF *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014594.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770002	1e-178	KC770002.1 Pyrus pyrifolia microsatellite TXY004 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009371925.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X3
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A498KBI7	0.0	A0A498KBI7_MALDO; Uncharacterized protein
STRING	XP_009371923.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]