PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014466.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 439aa MW: 48937.5 Da PI: 5.4127 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.3 | 5.6e-25 | 86 | 168 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++ +lW+++s++mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ Pbr014466.2 86 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISARMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 168 *******************************************************************997..56678*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.351 | 78 | 142 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0081 | 82 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.94E-27 | 84 | 149 | No hit | No description |
Pfam | PF13837 | 4.3E-18 | 85 | 169 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MYHSEKPRAV DLYKGGGLEE TETEMMMEVA AVNGRAPPHH QNQNEREQQQ SSGGEGEEQE 60 LCAAVSSRAG GGPGGAAGPK KRAETWVQEE TRSLIGFRRE VDGLFNTSKS NRHLWDQISA 120 RMREKGFDRS PTMCTDKWRN LLKEFKKARH QVKVGARSAK MSYYEDLQDL LRDRTTNSNS 180 ATANSNHNSV SAAAAAVATP PKLDSFVRFS DKGETFRELG LIKSEIPNSS LSNCCLEDST 240 IPFGPMEAND RSALNLERQL DHDGGDPLAI TAADAVAVNG VPPWNWREGP ENGGEDHSSY 300 CGRIITVKLG EYTRRIGIDG TGEAIKEAIK SAFRIRTKRA FWLEDEDQVV RSLDRDMPLG 360 NYTLHLDEGI TIKLCLYDDS DRIVRTEEIT LYTEDDFRDF LARRGLMGLR ELSGYRRVDT 420 LDDLHSGAMY QGVRLLVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-42 | 80 | 166 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014466.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008341347.1 | 0.0 | trihelix transcription factor GT-4-like | ||||
Swissprot | Q9FX53 | 1e-146 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A314XQG2 | 0.0 | A0A314XQG2_PRUYE; Trihelix transcription factor GT-4-like | ||||
STRING | XP_008341347.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-136 | Trihelix family protein |
Publications ? help Back to Top | |||
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