PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014320.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 328aa    MW: 36174.7 Da    PI: 9.7389
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014320.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.81.9e-31103160260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++vrY+eClkNhAas Ggh++DGCgEfmp  g+e t+ +lkCaAC+CHRnFHR+e + e
  Pbr014320.1 103 SRVRYRECLKNHAASSGGHVLDGCGEFMPG-GDEDTPGSLKCAACECHRNFHRKEIDGE 160
                  689**************************9.7777*******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-29105157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-29106157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-21106160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.714107156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.5E-24241303IPR009057Homeodomain-like
SuperFamilySSF466896.84E-15242308IPR009057Homeodomain-like
PROSITE profilePS500718.746245309IPR001356Homeobox domain
TIGRFAMsTIGR015651.6E-22247303IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.601.4E-5304325IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELREQDKVI GRMPSTFTYT PPPHRDSSCS KLSSSPDFPS AGYHGNNATL FTHPPHQTLD  60
RSRRDPDPTP VIVTPSAATT IASGSNLTAP PAPPHPPPST AASRVRYREC LKNHAASSGG  120
HVLDGCGEFM PGGDEDTPGS LKCAACECHR NFHRKEIDGE HVSNNYYVIN QQHNSRRDSA  180
ITRLPVLIST PPSLPVHHSA ARGPSPAMMM TFGSSGGVAA ESSSEDLNMN NNLFRGANYA  240
ADAQGSKKRF RTKFSQEQKE KMTEVAEKLG WRIHKQDEQE VEKLCSEVGI KRQGVKGWMH  300
QNRVGIKRQV FKVWMHNNRQ AMKKKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-182483031873ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014320.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371603.10.0PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLA0A251NBY41e-102A0A251NBY4_PRUPE; Uncharacterized protein
TrEMBLA0A251NEX71e-102A0A251NEX7_PRUPE; Uncharacterized protein
TrEMBLM5VV111e-102M5VV11_PRUPE; Uncharacterized protein
STRINGXP_009371603.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-54homeobox protein 24