PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 32238.5 Da PI: 7.2809 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 129.1 | 1.3e-40 | 27 | 88 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Pbr014170.1 27 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 88 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.4E-34 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-27 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSAESLDMLV CSKSQQQQQD RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS 60 CRRYWTKGGT LRNVPVGGGC RKNKRSSSTK RAQDQPLTPN SNPLPALGYD SNDLTLAFAR 120 LQRQQSCGGQ LGFDDHDHIT LLGNPTNAPD HNILGNPTSA PGFLDALRTG FLETHNGNFE 180 NLYNYGYGNG NGNLGEVEDC GGGMGIHHPF EEATTNSTTT AVTVTTMKQE LFNGQSESSN 240 KVLWGFPWQM NGGDHHSNMV GNGNHEYDSG RESWNGIASS WQHGLLHTTP LV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014170.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352402.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
Refseq | XP_009352403.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | D9ZIX6 | 0.0 | D9ZIX6_MALDO; DOF domain class transcription factor | ||||
STRING | XP_009352402.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009352403.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 4e-49 | Dof family protein |