PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014107.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 302aa    MW: 34238.3 Da    PI: 7.1879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014107.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++li+w + +nsfvv+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ ++F +g+++ll+++ 
   Pbr014107.1  13 FVMKTYQMVNDPTTDNLITWGRANNSFVVVDPVVFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFASEWFLRGQTHLLRNVA 100
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Pbr014107.1 101 RRKH 104
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-519102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTMEEGNNVI APFVMKTYQM VNDPTTDNLI TWGRANNSFV VVDPVVFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFASEWFLR GQTHLLRNVA RRKHMGKSSS SNSNSNFLQA  120
KHEEFDGEDI IREISGLKQE QKALEQEIRD MNRRLDATER RPQQMMAFLN KVAEDPEILP  180
RMMLEKNRAT AAQLGEKKRR VMMMASTSSS SSTMGATTSV KTEDEDDGTV GVISSSPEAG  240
FEMESFNRYP TPLEAQTASD WLRQRRVVDR VHAVQNPYNM NTTASGHGAE NTWNSGNSAY  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-24610213120Heat shock factor protein 1
5d5u_B4e-24610222129Heat shock factor protein 1
5d5v_B4e-24610222129Heat shock factor protein 1
5d5v_D4e-24610222129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371468.20.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV529e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLD9ZJ310.0D9ZJ31_MALDO; HSF domain class transcription factor
STRINGXP_009371468.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-85heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]