PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014084.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 590aa    MW: 62447.9 Da    PI: 7.7421
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014084.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.91.9e-13120159242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  Pbr014084.1 120 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 159
                  89**************************.********9875 PP
2TCR50.93.1e-16204243140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Pbr014084.1 204 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 243
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15119159IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.619120244IPR005172CRC domain
PfamPF036384.2E-10121156IPR005172CRC domain
SMARTSM011148.4E-20204245IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12207242IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGEGDGADSA PKKAQSDAAA GAATTSSSSS MNDVPARKLA RQLDFTGFGS APASVAVSEL  60
PKPSLPTVAV PPSLPKPPVV SVPVPVSLPQ QPHTLKPGKP ESPKSRPRPN VDAKDGTPKK  120
QKQCNCKHSR CLKLYCECFA SGIYCDGCNC VNCCNNVENE SARNDAIEAT LERNPNAFRP  180
KIASSPHGAR DTREEAGEVL ILGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK  240
NFEGSEERQA LFHGDHGNNM AYLQQAANAA ITGAIGSSGY ASSPPVSKKR KGQELFGPTA  300
KDPSLHRIGQ FQQGNNIRAP APSPLSSVPV NHLGGTTGLG PSKFTYRSLL ADIIQPQDLK  360
ELCSVLVVVA EEAANTLADQ RNTAGKPTET SLASTTQDRL QNEKESDAQN AVADDRSSLN  420
EADKISPEDS NSDGADVTKG RPMSPGTLAL MCDEQDTMFM SAASNGLMGD GNTSSRLPSA  480
QGMTEVYAEQ ERIVLTKFRD CLNRLITFET KCSSLARSEA ETQKDQHSNG STNARMDSQT  540
TQRPITNGVT KPVVPLAAKT TTSQTVTAAV SALSKTPSHP ENGDGRPKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3112125311132Protein lin-54 homolog
5fd3_B1e-3112125311132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014084.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840289e-85AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371439.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A498KCF50.0A0A498KCF5_MALDO; Uncharacterized protein
STRINGXP_009371439.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein