PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014066.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 464aa    MW: 50305.4 Da    PI: 7.2685
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014066.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.46e-32248303156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pbr014066.1 248 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303
                  68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355245305IPR017930Myb domain
SuperFamilySSF466895.38E-17245306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28246306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26248303IPR006447Myb domain, plants
PfamPF002498.1E-7250301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASSPSELIS YSMLLKSFAD LQASHLHDQP QTQKLEEFLS RLEEERLKID AFKRELPLSM  60
QLLTTAVEAS RQQLQAYRTN NIQGQTRPVL EEFIPLKHST SEGSEKPTNP TSDKANWMTS  120
AQLWSQATDH NPSATSKPQS TITSGPKEAD IGFSVSPKLG LDTKQPRSYG GGAFLPFSKD  180
RSPTLRPLPE LALASPENKA EIILEDHHEN GNNNSSSAAG NCNEQGNNSE GQNGQTTTAA  240
AAAQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRRPSPS PQAGGGPAPQ LVVLGGIWVS QEYATAAHNG PTALYSPHPG SHAPTHYCAT  360
PTPQDFYATQ QQLHHHTLQH QLHVYRTSTA SHTQSSPESD GRGAGDRSGS IEEGKSDSSS  420
WKGTESGDHV HMNGGDQRNG GGLAARRAED GGDSNGSQIT LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014066.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2950572e-36GU295057.1 Malus x domestica clone Florina BAC 36I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371414.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9ZQ851e-114EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A498KEJ90.0A0A498KEJ9_MALDO; Uncharacterized protein
STRINGXP_009371414.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-90G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]