PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013918.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 435aa    MW: 47210.5 Da    PI: 7.4176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013918.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09112132526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+f+ + G C+yGd+CkF H+
  Pbr013918.1 112 VCNFWVQ-GNCSYGDKCKFLHS 132
                  7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4652349IPR000571Zinc finger, CCCH-type
SMARTSM003560.52448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7108132IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-7111130IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.8E-16131246IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.56E-46133186IPR017986WD40-repeat-containing domain
SMARTSM003201.9E-6138177IPR001680WD40 repeat
PfamPF004003.6E-5141177IPR001680WD40 repeat
PROSITE profilePS5029419.275145394IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.75145186IPR001680WD40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003202.4E-5164178IPR020472G-protein beta WD-40 repeat
SMARTSM003205.6217254IPR001680WD40 repeat
SuperFamilySSF509781.56E-46224428IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.1E-31247428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.26261298IPR001680WD40 repeat
PfamPF004000.076266298IPR001680WD40 repeat
PROSITE profilePS5008211.21268307IPR001680WD40 repeat
PRINTSPR003202.4E-5285299IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0053301338IPR001680WD40 repeat
PfamPF004000.044303337IPR001680WD40 repeat
PRINTSPR003202.4E-5325339IPR020472G-protein beta WD-40 repeat
SMARTSM003201.4342385IPR001680WD40 repeat
SMARTSM003201.5388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDVDGGGSKR VFYRLGGPQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELP APPSQQGLNG  60
MASTKRHHAF AADTDGPSSR NRGPNNFNGG TSSTWGRTGG ANRVFVRKME KVCNFWVQGN  120
CSYGDKCKFL HSWSMGDSFS LLTQLEGHQK VVSGIALPSG SDKLYTGSKD QTVRVWDCAS  180
GQCLGVINLG GEVGCMISEG PWIFVGIPEA VKAWNTQTNS ELSLSGPVGQ VYAMVVGNDL  240
LFAGTQDGSI LAWKFNAVTN CFEPAASLIG HTLAVVSLVV GANRLYSGSM DPSIRVWSLE  300
TLQCIQTLTE HTEVVMSVLC WDQFLLSCSL DRQLKVWVAT QSGNLEATYT HTEEHGLITL  360
CGMHDSEAKP VLLCACNDNT VRIYDLPSFS ERGKIFSKQE IRSIQVGPGG LFFTGDGTGQ  420
VKVWKWSEPA AVTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-191334248323Tako8
6g6n_A1e-191334248323Tako8
6g6n_B1e-191334248323Tako8
6g6n_C1e-191334248323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371273.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A498JHE70.0A0A498JHE7_MALDO; Uncharacterized protein
STRINGXP_009371273.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1