PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013906.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 367aa MW: 37884.3 Da PI: 6.7213

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013906.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	77	147	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tg+++ +a + Pbr013906.1 77 PARRSSKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIQATGSGTVPAIAI 147 57899**********************************************************66666322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-28	81	148	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.606	82	136	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MKSNQRQSLE ESNELEHGGD SNNTTTTTSV SGPLVADPPA TALTMKEELS DPVQHLDPQG 60 SLSMGIVPVP VSTALKPARR SSKDRHTKVE GRGRRIRMPA VCAARIFQLT RELGHKSDGE 120 TIRWLLEHAE PAIIQATGSG TVPAIAISVG GTLKIPTTSP ARPNGEITEI PNKRKKMRGS 180 TDEFIDAHDQ NSLPSGLAPI APMTYGGGGG GGGFVPMWQV GATGAAGPFF MFPNSGAIQN 240 QPHLWAIPTA DCTTPIFNFQ PRPMSNFVSA FQPGVQVGGV SGGDGQLQAS SGSISSGTAA 300 GGGGSCSSSL GHSLDSASGT SAAAAAAAPP SSATQMLRDF SLEIYDKKEL QFMGQAANAQ 360 TTYSES*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MKSNQRQSLE ESNELEHGGD SNNTTTTTSV SGPLVADPPA TALTMKEELS DPVQHLDPQG  60
SLSMGIVPVP VSTALKPARR SSKDRHTKVE GRGRRIRMPA VCAARIFQLT RELGHKSDGE  120
TIRWLLEHAE PAIIQATGSG TVPAIAISVG GTLKIPTTSP ARPNGEITEI PNKRKKMRGS  180
TDEFIDAHDQ NSLPSGLAPI APMTYGGGGG GGGFVPMWQV GATGAAGPFF MFPNSGAIQN  240
QPHLWAIPTA DCTTPIFNFQ PRPMSNFVSA FQPGVQVGGV SGGDGQLQAS SGSISSGTAA  300
GGGGSCSSSL GHSLDSASGT SAAAAAAAPP SSATQMLRDF SLEIYDKKEL QFMGQAANAQ  360
TTYSES*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013906.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009371263.1	0.0	PREDICTED: transcription factor TCP19-like
Refseq	XP_018506230.1	0.0	PREDICTED: transcription factor TCP19-like
TrEMBL	A0A498JN13	0.0	A0A498JN13_MALDO; Uncharacterized protein
STRING	XP_009371263.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-62	TCP family protein