PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013902.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27165.8 Da    PI: 8.2169
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013902.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.7e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krie ++ rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g++ e+ss
  Pbr013902.1  9 KRIEKDTSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSQKGRIDEFSS 59
                 79***********************************************96 PP
2K-box69.11.5e-2382171998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +e+  ++l++e+a + k+ie L+ +qR+llG++L+s+s++eLq+  +qLe+sl +iR++K +l++eq e+l+ k++ l +en +L +++
  Pbr013902.1  82 EAEQYVQHLKHESATMAKKIEILEASQRKLLGNGLDSCSVEELQETSSQLERSLCNIRERKAQLYMEQGEQLKAKKRFLLQENAQLWEEY 171
                  578889********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.913161IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-27323IPR002100Transcription factor, MADS-box
CDDcd002653.42E-39378No hitNo description
SuperFamilySSF554551.31E-30375IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2186170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.71487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKRKIEIKR IEKDTSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIIFSQ KGRIDEFSSS  60
DMHQTIERFH KHENGGETNM VEAEQYVQHL KHESATMAKK IEILEASQRK LLGNGLDSCS  120
VEELQETSSQ LERSLCNIRE RKAQLYMEQG EQLKAKKRFL LQENAQLWEE YRAKPWMESS  180
GQEESASASA SYEKAGASAF VSNWSQRSMS SKVETELLIG PPRMNCCSHP SLKSVSDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19183187MEF2C
5f28_B5e-19183187MEF2C
5f28_C5e-19183187MEF2C
5f28_D5e-19183187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640060.0KP164006.1 Pyrus pyrifolia clone PpSOC1-1 SOC1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371258.11e-169PREDICTED: MADS-box protein AGL42-like
RefseqXP_009371259.11e-169PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS13e-71AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D4ZY401e-113A0A0D4ZY40_PYRPY; SOC1 MADS-box protein
STRINGXP_009371258.11e-168(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.35e-66AGAMOUS-like 42