PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013869.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 322aa    MW: 35906.9 Da    PI: 9.2929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013869.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.3e-15108159155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A+e++k+L+
  Pbr013869.1 108 QRMTHIAVERNRRKQMNDHLAILRSLMPDS---YAQRGDQASIVGGAIEFVKELE 159
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-18106180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.58E-13106163No hitNo description
PROSITE profilePS5088815.351107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14108177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-12108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPLLEDPPFN FIVYDTISAT PYTSQAQDYS SETANNFIPP KKFYYCNNAA AKSSNTSMML  60
EAAGGGGGKK TKQMSSHQQP QGQGEGQGRK KRRRKARVCK NKEEAETQRM THIAVERNRR  120
KQMNDHLAIL RSLMPDSYAQ RGDQASIVGG AIEFVKELEH LLQSLEAQKL QLFQHQQQHN  180
PEDIVTTPSK IVPSSPFTQL LEYPQKHSWS HSHCPNNKYT SKTKGATADI EVTLIETHAN  240
LKILSRRNIA GRSQLHKLVA GIHSLHLTIL HLTVSTMDPF VLYSISLKIE EGCLLSSADD  300
IAASLHHMLR VIEEAAARLL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894RKKRRRK
28994KKRRRK
3108119RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371214.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9SK917e-63BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A498JPS10.0A0A498JPS1_MALDO; Uncharacterized protein
STRINGXP_009371214.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-56beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]