PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 39434.5 Da PI: 6.7346 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd +l d++ + G g+W++ ++ g++R++k+c++rw +yl Pbr013860.1 15 KGPWTTEEDAKLMDYISRNGHGSWRALPKLAGLNRCGKSCRLRWINYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.6e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ +++++ lG++ W++Ia +++ gRt++++k++w++ Pbr013860.1 68 RGKFSEEEERVIINLHSVLGNK-WSKIATHLP-GRTDNEIKNYWNT 111 89********************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.879 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.24E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.379 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.25E-12 | 70 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MVRAPCCDEE SSLKKGPWTT EEDAKLMDYI SRNGHGSWRA LPKLAGLNRC GKSCRLRWIN 60 YLRPDIKRGK FSEEEERVII NLHSVLGNKW SKIATHLPGR TDNEIKNYWN TQLRKKLLHM 120 GIDPNTHKPR TDLNQLLDLT KLLGAASVGN SNMMTSPWDN ALKLKAAAGA AQLTKMQLLQ 180 HLYMMPVVRT SHSSVPPNNY NVDLMNPSSS LFGSHILNPF GGGHVSGAST MLSGQEWNQQ 240 ADVVDGFHAI SNSLEGFEGG FGAQGVISSN SPDQENMSSS CCYDDIYLQT KNHPLPALVS 300 SSSVYPGTSS SAANQMEMSM SGPAAPARTA IFDALEKLLD DETSESYWKD ILEYVLAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013860.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009371224.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A498JPH9 | 0.0 | A0A498JPH9_MALDO; Uncharacterized protein | ||||
STRING | XP_009371224.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-76 | myb domain protein 9 |