PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 42168.1 Da PI: 9.0309 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.6 | 5.2e-39 | 124 | 263 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsss 87 ++kkd+hski T++g+RdRRvRls+++ ++fFdLqd+LGfd++skt+eWLl+++ +ai +l s ss sec Pbr013717.1 124 PAKKDQHSKIFTAQGLRDRRVRLSIDVSRQFFDLQDRLGFDTASKTLEWLLNKSRKAIRDLRTRknnlscsserskSLSSTSEC-------------- 207 78***********************************************************99956555544433322233444.............. PP TCP 88 g..............kaaksaakskksqksaasalnlakesrakarararertrekm 130 + +++k+ k +++++a +akesraka+ararer r k+ Pbr013717.1 208 KdvvsdinevdnhvvSKEKEMVMMKLKESESA-GAYVAKESRAKAKARARERARAKK 263 12333333444455444444444444444444.68999*************766553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 3.66E-5 | 29 | 38 | No hit | No description |
Pfam | PF03634 | 2.1E-37 | 125 | 263 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.127 | 126 | 184 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.344 | 245 | 262 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MFSSSSCNSN TVSPQPNFPF SSTNYHPHPP PPPPPPPPCV NLVTCTGDIL FHHIHDSLSG 60 QFSHQNISLM APSAHQTLTH LGVSSNTVPP SINAPVSSSC GDLHHHQYSN YVLHSSRQDV 120 VVAPAKKDQH SKIFTAQGLR DRRVRLSIDV SRQFFDLQDR LGFDTASKTL EWLLNKSRKA 180 IRDLRTRKNN LSCSSERSKS LSSTSECKDV VSDINEVDNH VVSKEKEMVM MKLKESESAG 240 AYVAKESRAK AKARARERAR AKKVCITSRR PQQILNQMNL FNEQLNDHET NISSSSKVNF 300 GDHHVNQELG SLLDNQAHHH HFQEEDQSAL IKRNKMKLIS SVVSNYNTTD QSSSNSYLQF 360 TNSSQYWDIN GAFPMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-15 | 131 | 184 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-15 | 131 | 184 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013717.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349286.2 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A498HB27 | 0.0 | A0A498HB27_MALDO; Uncharacterized protein | ||||
STRING | XP_009349286.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 9e-27 | TCP family protein |