PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013550.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 321aa    MW: 35004.3 Da    PI: 7.6637
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013550.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222.1e-383494262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 k++al+cprC+st tkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s
  Pbr013550.1 34 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNNKRS 94
                 7899*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-272686IPR003851Zinc finger, Dof-type
PfamPF027011.6E-323592IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7053892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDTAHWPQGI GVVNSMEDFS STRPITERRA RPQKDQALNC PRCNSTTTKF CYYNNYSLSQ  60
PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN NKRSNNSDSS SPSTSSAKKV AHDRDHHLTP  120
QSNFPSQSAS QNPNKIHFQG QDLNLAYPPA DQEHDNNNIT ELPFIIESID NRTYHHQNPS  180
SSATTTTSHH FSSAMELLKS TGIASRGLTS FVPMAAVEVP DHSSNITMFS SGFPMQEFKP  240
SGLSFSLDGF ESAGFGGCLQ GVQETTNTNH ARLLFPTAHD LKQQIPSSTT TAADFDQHNN  300
RGGGDSGGGY LNGMLGGGSW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967971e-54BT096797.1 Soybean clone JCVI-FLGm-21O11 unknown mRNA.
GenBankDQ8572711e-54DQ857271.1 Glycine max Dof21 mRNA, complete cds.
GenBankDQ8572721e-54DQ857272.1 Glycine max Dof28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351964.10.0PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLA0A498KKI90.0A0A498KKI9_MALDO; Uncharacterized protein
STRINGXP_009351964.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.12e-43Dof family protein