PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013436.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 775aa    MW: 88578 Da    PI: 6.9655
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013436.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.14.6e-2669154291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +g+w+v++++++HnHel p
  Pbr013436.1  69 FYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKDHNHELLP 154
                  ****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-2469154IPR004330FAR1 DNA binding domain
PfamPF105512.4E-25267360IPR018289MULE transposase domain
PfamPF044345.1E-9547581IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.979547583IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSVGHMKTFA PLSFPTTFEG GCGVDLNFPT ATTTTVMDSS GPALALATTS IAEPHDAMEF  60
ESHEAAYTFY KAYAKSVGFG TAKLSSRRSR ASKEFIDAKF SCIRYGNKQQ SDDAINPRPS  120
PKIGCKASMH VKRRPNGNWY VYSFVKDHNH ELLPDQAHFF RSHRNTDPLN NDVRIRRRKS  180
LAAVSSLFSA YQNVDCLESY LRNQHDKGRI LVLEAGDAQL LLEYFMRLQE DNPKFFYAVD  240
LNEEHRLRNV FWVDAKAMED YTNFNDVVFF DTTYFSNKYK IPLVLFIGVN HHIQPTLLGC  300
ALIADDTVYT FMWLMQTWFI AMGEQAPRVM LTDQNDAIKA AIPAVFPGTR HCFSLWNIME  360
KMHRQLEFLS MWHDSFMEKF TKCIFKSWSE QQFEKRWWKL IDRFNLREVG WMQSLYEDRT  420
HWAPTFMRDI SFAGLSPTSR SESLNSSFDK YIQGETSLQE FMERYRAILE DRYEEEAKAN  480
FDAWHGTPEL KSPSPFEKQM SLVYTHEVFK NFQVEVLGAA ACHLKKENED ETATTFSVKD  540
FEDNQNYTVE WNESKSDIYC SCHSFEYKGY LCRHAIVVLQ MSGVFIIPPK YILQRWTNAA  600
MSRHAIGERV DEVQSKARRY NDLCRRAIIL GEEGSLSQES YDVALSAIKE ALKQCASLTN  660
CLENNAKPHD SAIHGVCGVD EENQCSTTSG ANKTPRRAGS GKEVARNGNS TSKKGKVPQL  720
EVTSFGTQVS HFQMQLSDSR PMQLHNAVPT MFQSVASTQL HNAASTHVHE NLPQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013436.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351809.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A251QQB10.0A0A251QQB1_PRUPE; Uncharacterized protein
STRINGXP_009351809.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]