PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013366.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 333aa    MW: 37427.8 Da    PI: 7.0909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013366.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.6e-13247272126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++ G+C+yGd C+FaHg
  Pbr013366.1 247 FKTELCNKWQEVGECPYGDHCQFAHG 272
                  79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18241279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-10243278IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-8246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.417246274IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10247272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8280314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11280313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859284312IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4284311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQNDTAYGGH ATSAMPQSHT DDAVFASLYS AIFDRKASTS QYDVESDHSS SSAHRHRQLY  60
NSLLVQDHQE MVNRHSRCLK RLQETSEEAD ALRRENVHLR SLNLELNKHL SLLIHASVQK  120
QFGSPSSAQT TAPFGIVNGL RDMTIDDKRA EQDMSDESPM SVIESEGGDA ENIDVERFSL  180
PKSISVRSDG YVKAAPQGGA STAARTRTAS RPRAATTFNA SQKVFVPRGV KEEDPPLELE  240
VYNQGMFKTE LCNKWQEVGE CPYGDHCQFA HGIEELRPVI RHPRYKTEVC RMVLSGVVCP  300
YGHRCHFRHA LTENEKMMVP NKPRQRQFNL DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21247313470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503594.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F56e-81C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A498HFG60.0A0A498HFG6_MALDO; Uncharacterized protein
STRINGXP_009357366.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-73C3H family protein