PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013314.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27705.2 Da PI: 7.4248 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.6 | 2.2e-08 | 119 | 166 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ l+P + k + a +L ++ Y++sLq Pbr013314.2 119 SHSLAERVRREKINDRLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 166 8*************************8....355888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-16 | 113 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.83E-11 | 113 | 170 | No hit | No description |
PROSITE profile | PS50888 | 15.173 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-16 | 115 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 119 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-8 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MELIDDLCDL ETSLGTNHHE IMALSANDTS FTTDHHHQPQ PDQLPINFTH HIQSFSHNSD 60 DFLVAHSTAH LMTGDFRQET GKGKSLGGRK RKINNSDKDG EKLKEVIHVR AKRGQATDSH 120 SLAERVRREK INDRLRCLQN LVPGCYKTMG MAVMLDVVIS YVQSLQKQIE FLSMKLSAAS 180 AYYDFNSPGV DAADAMQQQQ MKVIKRATWD VAGDKYCISR GTRDGIKIRD SEGYGGLPHL 240 NNAAWPI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013314.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951208.1 | 1e-142 | transcription factor bHLH75-like | ||||
TrEMBL | A0A498HKX9 | 1e-141 | A0A498HKX9_MALDO; Uncharacterized protein | ||||
STRING | XP_008339657.1 | 1e-142 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14813 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 2e-48 | bHLH family protein |