PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013259.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 378aa    MW: 41417.9 Da    PI: 7.0092
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013259.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.6e-32211266156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pbr013259.1 211 KQRRNWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 266
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.649208268IPR017930Myb domain
SuperFamilySSF466892.79E-18209269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28209269IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26211266IPR006447Myb domain, plants
PfamPF002497.2E-8213264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MECTEEMQAS AKLGFREYVK ALEEERHKIQ VFQRELPLCL ELVTQAIERG KQQISDTTAD  60
YLHGQSECSE QTSSEGHVFE EFIPLKRISS SDSDEDEVRE SQEAKDNEKD DKITGDDGKK  120
PDWLRSVQLW NTTPDAPLKE ELPRKALVME VKRNGGAFQP FQREKSIGKT NGPVAKEPYS  180
APATSSTTDT ASGGSGGSNK KEEKDGQGQR KQRRNWSPEL HRRFLHALQQ LGGSHAATPK  240
QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTMHGNSNS SAPAPQFVVV GGIWVPPQEY  300
AAMAATTASG EAANGIYAPL ASTPPAVAQV SPPIQRPRPK QPKPFHSDEG VSHSEGRGHS  360
NSTATSSSTH TPASPVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14211264255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356299.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FPE81e-101HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A498HLS20.0A0A498HLS2_MALDO; Uncharacterized protein
STRINGXP_009356299.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.15e-89G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]