PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 51366.2 Da PI: 4.5205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.2 | 3.5e-32 | 58 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 lp+G++F+Ptd+e++++ ++k+ g++ ++++ i +vd i+ ++P++Lp +vk + + +fF+++ k+y+tg+rk+r+++ + +W++ Pbr013250.1 58 LPKGVKFDPTDQEIIWHLIAKSGVGDRkphpfIDEF--ILTVDddegICCSHPRKLP-SVKLDGSASHFFHRAIKAYNTGTRKRRKIHdgdgDVRWHK 152 799************888877755555576543333..433322344**********.667788999******************9883433446*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+v+ +g + g+kk++v+y + r +k++kt+Wvmh+y+l Pbr013250.1 153 TGRTKPVIL-DGVQRGCKKIMVLYmsTVRGEKPVKTNWVMHQYHL 196 *********.99************6656999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-38 | 43 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.363 | 58 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-13 | 59 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAGPSWLVDK NRIATKIKSA SGRYDPNVII WQSNPTKACP KCQHTIDNSD VAQEWPGLPK 60 GVKFDPTDQE IIWHLIAKSG VGDRKPHPFI DEFILTVDDD EGICCSHPRK LPSVKLDGSA 120 SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVI LDGVQRGCKK IMVLYMSTVR 180 GEKPVKTNWV MHQYHLGVEE DEKDGEYVIS KIYYQQQEGK EADKTDQDVP ESIDAVITKV 240 DPVTPKLVTP EPPRAERKLG DFDLGLDTPA PSRDPFLQYR VEDGAEDEDE VHFEVDRALD 300 EIHPEVDCAE DDVCPESEMP DDYDQHKLEN QADEVINNTE NIAQEDPKWW DSESQNLLDS 360 QQLVEGLSLC DDLLQSQSPT RGGLENGEQA HIKPRLADYA KLGPEDLKRD LEACQNLVLD 420 PANILELDTP PDFRLSQLEF GSQESFLSWG GKVAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-14 | 58 | 196 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013250.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356240.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 1e-179 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A498HJN4 | 0.0 | A0A498HJN4_MALDO; Uncharacterized protein | ||||
STRING | XP_009356240.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-172 | NAC family protein |