PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013246.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 352aa    MW: 39077 Da    PI: 6.758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013246.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14160206354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Pbr013246.1 160 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 206
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-12160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-14161213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-5170209No hitNo description
Gene3DG3DSA:3.30.70.2605.6E-4243305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMCGKEEDQG ECSQSVQNLQ AFQEHLFLQQ QQHHQMQQHQ QGGLIFPLDH QPPPPTPILQ  60
PWTLPPIYNP TAHDPFLLPT PPQIPSSSSY ASFFNRRPPS LQFTYDGSAS DHHHHHHLRI  120
LSETLGPMVQ PGSGAFGLQA ELGKLTAQEI MDAKALAASK SHSEAERRRR ERINNHLAKL  180
RSLLPSTTKT DKASLLAEVI QHVKELKRQT SLIAETSPVP TETDELLLDD ASDEDGKFVI  240
KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITTLGGRVK NVLFITGEED SSSSGGEQVQ  300
MQHQQYCKSS IQEALKAVME KTGCGDQDQS STGSAKRQRT NNINILEHRS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356151.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-112BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A498HF560.0A0A498HF56_MALDO; Uncharacterized protein
STRINGXP_009356151.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]