PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013244.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 462aa    MW: 51334.8 Da    PI: 9.404
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013244.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.42.8e-431663122131
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssas 83 
                   gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aik+l +                 +          ++++s++
  Pbr013244.1 166 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDTLGFDKASKTIEWLFTKSKSAIKDLKQHllvspkedysstnggaT----------AKVNSSE 253
                  69**************************************************************99887655544333220..........2222222 PP

          TCP  84 nsssg..........kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131
                  n + +          +aa+ +   +  ++k++ +   +a+esr +arararertrekm+
  Pbr013244.1 254 NTTGEvtsrimepssSAANGDIsVGFGREKRNRKLCVVARESRVEARARARERTREKMM 312
                  1111144455566545555555344455555555567777*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-40167312IPR005333Transcription factor, TCP
PROSITE profilePS5136936.285168226IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.048293310IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFPSSSTTSN FQLPFLCDDN QTNAIIDDFH QNPNSILSHG GHHQYYSQYY YSEDQQQQAP  60
DFLEHDGMLL SYLLSQQQLL LGNSSTTTNV ATDNNHTRAH ESTEISIAAS NSNKAMVVIN  120
RDDDDGRNEL TVNTAVASKI KKNNVKTSGG GGGGEKKAKV ARKRASGKKD RHSKIYTAQG  180
PRDRRMRLSV QIARKFFDLQ DTLGFDKASK TIEWLFTKSK SAIKDLKQHL LVSPKEDYSS  240
TNGGATAKVN SSENTTGEVT SRIMEPSSSA ANGDISVGFG REKRNRKLCV VARESRVEAR  300
ARARERTREK MMRIRGFDQD HQHLTKQSPN HHEHQNPNEL FETAGMMNSA MMSTNCCNDG  360
QKIVGRTSSS CGGAQRSFLN FDFWRHVSEA SRANSEDCGF PGNWGAINYT KNIITGNVLQ  420
VEQNPTSYPK QQNPRSIFGT GTQEQNPNSS FLTTFIKAQD P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013244.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352929.20.0uncharacterized protein LOC103416466
TrEMBLA0A498HMF50.0A0A498HMF5_MALDO; Uncharacterized protein
STRINGXP_009358647.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-29TCP domain protein 12