PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013200.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 760aa    MW: 82985.9 Da    PI: 7.3969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013200.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08241289355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pbr013200.1 241 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 289
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16236307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-11236293No hitNo description
PROSITE profilePS5088815.485238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6241289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513755.492502532IPR002885Pentatricopeptide repeat
PfamPF015350.17512531IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.079533567IPR002885Pentatricopeptide repeat
PfamPF015350.14535564IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.619599633IPR002885Pentatricopeptide repeat
PfamPF130413.9E-7599645IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-4601634IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.695634668IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.097670698IPR002885Pentatricopeptide repeat
PfamPF144325.5E-11700759IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MLKGGMFLPN GPGVLPQSLS QFPADSAFIE RAARFSCFNG GSFSDLVNPF GFPESMSMYS  60
KSGGLMPWTQ ELVAGNGSKG VPGVHSQRNE LNGDVSLPME QGTTEGSPPK DEKKSESLAK  120
SHDEAKHAIG GSGNESDEAD SSGGGGGGQE EPSMLDGAKP SAKGFKKRKR SRQANELDQA  180
NAQQPGESAM DITEFQDKGE QQPASTPNKT TGKQGKQGSQ ASDPPKEEYI HVRARRGQAT  240
NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA  300
TVNPRLDFNI EGLLANDILQ SRVGPSSTLG FSPDMPMIYR QLHPSQPGLI QAGLPGMGSS  360
SDLLRRAMGS QITQMTGGFK ELSQLPNVWE DELHNVVQMS YGGSTPPSSQ DVDGSTPPGQ  420
MKVPFTAKGL WAGVFFLRLL LQLTQALQPS RNDAQAKKLH SQIIKTVTNP ETFLLNNLVT  480
TYGRLGNFKL CPPSVRPNAS PKPFLLECHS FCYSKSGRLS EMQEIFNRMP TRDGVSWNSL  540
NSGHASCGSV AEAVKVYSLL LRDGPGNLNR ITFSTMLVLS SSQGIEDSHR LFDEMEIMDE  600
VSWTALVSGY AQFGKAYETF VLFERMLAHG LKPDGVTFIG VLSACGRAGL VEKGHHYFES  660
MSPRMLQAIS ALKPLCSKGK WDEVAKLRRG MRDKGARKEP GCSWIKYKNR VHIFSADDQS  720
SPFSDQIYAK LEELNCKMIE TGYEPDMSSV LHDVEESEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A3e-194376979428pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013200.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355681.10.0PREDICTED: transcription factor bHLH49-like
SwissprotQ9CAA91e-106BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A498I7J50.0A0A498I7J5_MALDO; Uncharacterized protein
STRINGXP_009355681.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]