PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013186.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 335aa    MW: 36776.5 Da    PI: 5.8827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013186.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15e-164594255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Pbr013186.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 94
                 899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8534393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1844115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-2244115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-154598No hitNo description
PfamPF000102.3E-134594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-124999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRTAAKGNQE EDEYDDEEFG SRKEGPSSNS NSKDARNNDK ASVIRSKHSV TEQRRRSKIN  60
ERFQILRDLI PHSDQKRDTA SFLLEVIEYV QYLQEKVQKY EGSYQGWSPE PTKLMPWRNS  120
HWRVQSFVGN PQAIKSDAAP VSPFPGKFDD NNISINPNML PNSTPNPVES DPSRDVASKI  180
VDRQPEIVNK GIPLPMPLPN MTPPVRSDGM LAHPLQGQIS DAQSTQCPTT SASDVLSQQE  240
ELTIEGGTIS ISSVYSQGLL NSLSQALQSA GVDLSQASIS VQIDLGNRAN RGLSSGTPAS  300
KDNDNPHSSN QTMAHFRDAG SGEDSDHAHK RLKT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355532.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-117BIM2_ARATH; Transcription factor BIM2
TrEMBLD9ZIP30.0D9ZIP3_MALDO; BHLH domain class transcription factor
STRINGXP_009355532.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-108BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]