PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013165.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 509aa    MW: 57253.4 Da    PI: 10.0637
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013165.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-18141228196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k++++s+v +  +l lp +f++e+ +k ++  +++lede+g++++  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ ++f  ++ +
  Pbr013165.1 141 FVKTMVRSHVYSCFWLGLPTRFCDEYLSK-TG-SDMVLEDEHGKEYDAVY--IGTRTG--LSGGWRAFALEHKLDDGDALVFELTEPTRF--KIYI 228
                  89************************655.34.49***************..455433..***********************9876666..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-21134230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-23134231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-25139230No hitNo description
PfamPF023628.4E-17141228IPR003340B3 DNA binding domain
SMARTSM010194.1E-23141232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVAMAATTYE EARNQRLEEN KRKFQDLGIS SISKTLTHLT ASPNKTQHRV SKPKARNACL  60
DIEPRRSSRQ RNTVQTYRDE VDIDLSPLRK RLRSRSSSSF CGSYLARPME EVRLCSYEER  120
QAALKAAEKL LENLQTDNPS FVKTMVRSHV YSCFWLGLPT RFCDEYLSKT GSDMVLEDEH  180
GKEYDAVYIG TRTGLSGGWR AFALEHKLDD GDALVFELTE PTRFKIYIVK VSSMSSIKSI  240
VDKEDIPSAE NTSKTAVKPN SESTQKRRTK RGSVSEIDDS QPSPGSESDQ RRRSKRGIVA  300
PMDDAKVPTD LESNQIRRSK RGAAPVADDS KTNFNSESNQ LRRSRRGTVP AMDDTKASPD  360
LGSDQKRRSK RGTVPAMDDT KASPELGSDQ KRRSKRGVVP EMNGPETSPK LSTESAKGCE  420
TKQEVSAMKV DEVAPKQVRK KAKSNRVRLT ESPEGCEFKP EKTEEKPEVP ENKPEVEEKN  480
ARAEDENECV AKKPRKKVVK QRLFRKRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793LRKRLRS
28894RKRLRSR
3495506KKVVKQRLFRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013165.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355055.10.0PREDICTED: putative B3 domain-containing protein At5g58280 isoform X1
TrEMBLA0A498K9S80.0A0A498K9S8_MALDO; Uncharacterized protein
STRINGXP_009355055.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-49B3 family protein