PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013136.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 897aa MW: 98845 Da PI: 6.6592

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013136.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.3	3.2e-19	327	427	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+ Pbr013136.1 327 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGRLVI 422 99************************555556677***********99899999999.*******************987.8999999 PP EEE-S CS B3 95 kvfrk 99 +++++ Pbr013136.1 423 GFRKA 427 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-29	323	428	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-21	324	427	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.64E-24	325	426	No hit	No description
PROSITE profile	PS50863	11.18	327	428	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-23	327	428	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-16	327	427	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.885	590	640	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.0E-11	595	637	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MDSKICMNPS CRTANTHEWK KGWPLRTGGF AHLCNKCGVE YENSVYCNAF HSGETGWRDC 60 NLCHKVSLQF GHPLHCGCIV SETLYECLDF GGIGCIGCAS QPRVIQNDDV LNGFGGLKIS 120 NSGDQQSTVP QNGALSDTAN EGKLLQLCQV MEANESNLSS QSQRGDINVS PVQTKREEVT 180 YPKGEVGPGF SSITRPSIGS LTFTKPDNGR IMIGVKDMNN PSSEPSLSMT LGGPSATPNF 240 AQPFTGGILE GRDQSKMPSS FQQGQKIRPI LPRPLRPPSP VHHVRVARPP SEGRGKSQLL 300 PRYWPRITDQ ELQKLAGDLN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQSE 360 GLPIRIQDVK GNEWTFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPGGRL 420 VIGFRKASRS LDMQDPQTSF LPNGTPGETS CPSVVENLVS GSGQSSLYQT NTGSKDPYLN 480 ALSGHLHLAD GDTSLHNCEN HSHLTSEDLL QRPVSNSDKK RARNIGPKSK RLLLHREDVL 540 ELRLTWEEAQ DLLRPPPSVK PSIVTIEDHE FEEYDEPPVF GKRSLFIAES ERQEQWAQCD 600 DCFKWRRLPV NVFLPPKWTC SENSWDMNRC SCSAPEEVSQ KELDNLLRPS IDLKKRRIVV 660 NHNEAQEHEP SGLDALASAS AAILGDNVDY SGEQSLGATT RHPRHRPGCT CIVCIQPPSG 720 KGKHKPTCTC NVCMTVKRRF KTLMMNKRKR KSEREAENAH RDNNDHKDES EMNGTSTEIE 780 LHMNHSSENG SSSEKRIEAD VAESSCAGQI DLNCEPKHNY VQVSGLNLLR LTDAACQPVK 840 NGTKESFLTN KMCEPQAGLG SSLLAQETAE TDRLLCNEGS LSSVAAWDLE GRGGED*

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MDSKICMNPS CRTANTHEWK KGWPLRTGGF AHLCNKCGVE YENSVYCNAF HSGETGWRDC  60
NLCHKVSLQF GHPLHCGCIV SETLYECLDF GGIGCIGCAS QPRVIQNDDV LNGFGGLKIS  120
NSGDQQSTVP QNGALSDTAN EGKLLQLCQV MEANESNLSS QSQRGDINVS PVQTKREEVT  180
YPKGEVGPGF SSITRPSIGS LTFTKPDNGR IMIGVKDMNN PSSEPSLSMT LGGPSATPNF  240
AQPFTGGILE GRDQSKMPSS FQQGQKIRPI LPRPLRPPSP VHHVRVARPP SEGRGKSQLL  300
PRYWPRITDQ ELQKLAGDLN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQSE  360
GLPIRIQDVK GNEWTFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPGGRL  420
VIGFRKASRS LDMQDPQTSF LPNGTPGETS CPSVVENLVS GSGQSSLYQT NTGSKDPYLN  480
ALSGHLHLAD GDTSLHNCEN HSHLTSEDLL QRPVSNSDKK RARNIGPKSK RLLLHREDVL  540
ELRLTWEEAQ DLLRPPPSVK PSIVTIEDHE FEEYDEPPVF GKRSLFIAES ERQEQWAQCD  600
DCFKWRRLPV NVFLPPKWTC SENSWDMNRC SCSAPEEVSQ KELDNLLRPS IDLKKRRIVV  660
NHNEAQEHEP SGLDALASAS AAILGDNVDY SGEQSLGATT RHPRHRPGCT CIVCIQPPSG  720
KGKHKPTCTC NVCMTVKRRF KTLMMNKRKR KSEREAENAH RDNNDHKDES EMNGTSTEIE  780
LHMNHSSENG SSSEKRIEAD VAESSCAGQI DLNCEPKHNY VQVSGLNLLR LTDAACQPVK  840
NGTKESFLTN KMCEPQAGLG SSLLAQETAE TDRLLCNEGS LSSVAAWDLE GRGGED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-70	305	434	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	736	750	KRRFKTLMMNKRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013136.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354857.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like
TrEMBL	A0A498K715	0.0	A0A498K715_MALDO; Uncharacterized protein
STRING	XP_009354857.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10323	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1