PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013133.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 439aa MW: 46864.5 Da PI: 6.5719

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013133.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	238	286	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kvk+L++e ++L +l + Pbr013133.1 238 KRAKRILANRQSAARSKERKSRYIQELERKVKTLQTEATTLSAQLTLFQ 286 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-14	234	298	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	236	299	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-10	238	292	No hit	No description
Pfam	PF00170	1.0E-8	238	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-10	238	289	No hit	No description
CDD	cd14703	1.22E-22	239	288	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKQDPPLQQS NPNPDFFTFN SNPITNPKSN PIPPLPRSVG IDGNANASGL AAAATTSSST 60 SFTTSTSLSL ASMLGNSASP FIREDADGSH HHHNHGVSHR KAHSEVSFRL PEDMMDLPAA 120 AADPFNGGSS TASLEEMGSE EDLFSTYIDL DKLGGSNNSS DQNSGGNDGP DGGANGGPNG 180 NAGGGEGGGG GEKRPSRHRY SNSVDGSSTS TGLFGEVMEA KKAMPPDKLA ELWALDPKRA 240 KRILANRQSA ARSKERKSRY IQELERKVKT LQTEATTLSA QLTLFQRDTT GLSTENTELK 300 LRLQSMEQQA QSRDALNEAL KKEVERLKIA TGEMMSPSDS FNLGMHQMPY NHPSAYFPLQ 360 QQPGPASHQT MQLRQFNHSQ SSMPTQHLHQ SNSHTRLSDM LQNGPVSQLQ GLDIGSKGAP 420 VVNSEGPSLS ASEKSSPF*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKQDPPLQQS NPNPDFFTFN SNPITNPKSN PIPPLPRSVG IDGNANASGL AAAATTSSST  60
SFTTSTSLSL ASMLGNSASP FIREDADGSH HHHNHGVSHR KAHSEVSFRL PEDMMDLPAA  120
AADPFNGGSS TASLEEMGSE EDLFSTYIDL DKLGGSNNSS DQNSGGNDGP DGGANGGPNG  180
NAGGGEGGGG GEKRPSRHRY SNSVDGSSTS TGLFGEVMEA KKAMPPDKLA ELWALDPKRA  240
KRILANRQSA ARSKERKSRY IQELERKVKT LQTEATTLSA QLTLFQRDTT GLSTENTELK  300
LRLQSMEQQA QSRDALNEAL KKEVERLKIA TGEMMSPSDS FNLGMHQMPY NHPSAYFPLQ  360
QQPGPASHQT MQLRQFNHSQ SSMPTQHLHQ SNSHTRLSDM LQNGPVSQLQ GLDIGSKGAP  420
VVNSEGPSLS ASEKSSPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013133.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354848.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	4e-93	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A498KEV1	0.0	A0A498KEV1_MALDO; Uncharacterized protein
STRING	XP_009354848.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	8e-88	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]