PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012970.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 293aa    MW: 31823.2 Da    PI: 9.6194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012970.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.37.9e-08139161123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++Cgk F+r  nL+ H+r H
  Pbr012970.1 139 HYCEICGKGFKRDANLRMHMRAH 161
                  68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-6134162No hitNo description
SMARTSM003550.002139161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-6139161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884139166IPR007087Zinc finger, C2H2
PfamPF128744.2E-4140159No hitNo description
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SMARTSM0035546187220IPR015880Zinc finger, C2H2-like
SMARTSM0035517225247IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSFPGQPFLT PPENLVQSTN EGPAAPLRNL SMVRTRMDSL QSFLTESIHA NALISKDQMD  60
MVSSGIASAI HEIISNGAAL LAFSQNPIPS SDPTRTHSAK IEASEVKKEM EVNDCGKDDA  120
DGGEIVEGDA MELLAEHIHY CEICGKGFKR DANLRMHMRA HGNRFKTPEA LTKPDKTPAE  180
LSRNSRFSCP YVGCNRNKAH GKFRPLKSVI CVKNHFKRSH CPKMYSCNRC NKRSFSVVAD  240
LKSHLKHCGE ARGGGAGGTN FSIGGGARAA RTSRGRASCS GTWRCSKGTC RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370699.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A498KNX90.0A0A498KNX9_MALDO; Uncharacterized protein
STRINGXP_009370699.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-52C2H2 family protein