PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012959.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 313aa    MW: 34991.8 Da    PI: 6.4656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012959.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.16.9e-39311301100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i+++q+ +e  kael+ + 
  Pbr012959.1  31 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDQPDKDEAMRTIIFQSDVRANDPVGGCYRIIREMQRLIEYNKAELDIVL 128
                  7*********************************************************************************************9887 PP

       DUF260  99 ee 100
                  ++
  Pbr012959.1 129 HQ 130
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.42530131IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3631126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSSSGHSHNH THHISTTTTT PSTKGNGNTQ ACAACKYQRR KCAPDCILAP YFPHDRQRQF  60
LNAHKLFGVS NITKIIKHLD QPDKDEAMRT IIFQSDVRAN DPVGGCYRII REMQRLIEYN  120
KAELDIVLHQ LAICTAQAQQ VHQQQHQNPI QMPEIGDQNT CDLLINGDPL SLCGNPMGHF  180
HYIQQPQPPH HAVTLQQEQP HEQQLSYVFV QNNANSNNNS DNNNGGPHVH PHHQHLHEDV  240
SMWAMQDSMS SLDIKQCGGG MNGIANGCED LKPFLDQMGC GDDHERNNGE VVDINGDHQH  300
SEEALLRVDR AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-25191251105LOB family transfactor Ramosa2.1
5ly0_B1e-25191251105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012959.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506085.10.0PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A498HDK91e-160A0A498HDK9_MALDO; Uncharacterized protein
STRINGXP_009370692.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-54LOB domain-containing protein 22