PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012908.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 357aa MW: 40481.9 Da PI: 5.0041

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012908.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.4	6.1e-35	47	138	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ + ++sws+ g sfvv+d+++f ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ik Pbr012908.1 47 FLNKTYDMVDDSGSNGVVSWSRGGASFVVWDPHTFVMSLLPKYFKHNNFSSFVRQLNTYGFRKVDPNR---------WEFANEGFVRGQKHLLKNIK 134 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr012908.1 135 RRKA 138 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-37	43	136	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.05E-34	43	136	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-59	43	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	47	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-31	47	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	86	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	98	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MNYLYPVKEE YPGSSSSQPG PGFDQMVMTI PPPQPMEGLN DMGPPPFLNK TYDMVDDSGS 60 NGVVSWSRGG ASFVVWDPHT FVMSLLPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE 120 GFVRGQKHLL KNIKRRKAPS QPFPAQQAVG PCMELGHFGI DGEVDRLRHD KQVLMMELVK 180 LRQQQQSTRA YLQAMEQRLQ GTELKQQQMM SFLARAMQNP AFIQQLVQQK EKKKELEEAM 240 TKKRRRPIDQ GLSGVGGGES NQVKREPPEF GDCEYEMSEL EALAMEMQGL GKVGKEQKEV 300 VEPLDSGDKE LDEGFWEELL SERFEGDSTI PSADVGEDED VIILADRLGY FGSWPK*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MNYLYPVKEE YPGSSSSQPG PGFDQMVMTI PPPQPMEGLN DMGPPPFLNK TYDMVDDSGS  60
NGVVSWSRGG ASFVVWDPHT FVMSLLPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE  120
GFVRGQKHLL KNIKRRKAPS QPFPAQQAVG PCMELGHFGI DGEVDRLRHD KQVLMMELVK  180
LRQQQQSTRA YLQAMEQRLQ GTELKQQQMM SFLARAMQNP AFIQQLVQQK EKKKELEEAM  240
TKKRRRPIDQ GLSGVGGGES NQVKREPPEF GDCEYEMSEL EALAMEMQGL GKVGKEQKEV  300
VEPLDSGDKE LDEGFWEELL SERFEGDSTI PSADVGEDED VIILADRLGY FGSWPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	7e-23	45	136	18	120	Heat shock factor protein 1
5hdg_A	6e-23	45	136	8	110	Heat shock factor protein 1
5hdn_A	6e-23	45	136	8	110	Heat shock factor protein 1
5hdn_B	6e-23	45	136	8	110	Heat shock factor protein 1
5hdn_C	6e-23	45	136	8	110	Heat shock factor protein 1
5hdn_D	6e-23	45	136	8	110	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	LKNIKRR
2	231	245	KKKELEEAMTKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012908.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB627237	2e-75	AB627237.1 Malus x domestica mRNA, microsatellite: MEST080, clone: FRT01_22_F12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018506113.1	0.0	PREDICTED: heat stress transcription factor A-6b
Swissprot	Q6VBB2	1e-124	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A498K920	0.0	A0A498K920_MALDO; Uncharacterized protein
STRING	XP_009370758.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1100	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-106	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]