PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34981.8 Da PI: 6.6133 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.2 | 3.7e-24 | 7 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.........kvka..eekewyfFskrdkkyatgkrknra..tksgyWk 84 +p+G+rF P+d+el+ +yL++k++g+ + +++++d+y + eP+d+ + + + ++k++y F++ ++k+++g+r r+ t+ g+Wk Pbr012882.1 7 VPVGYRFMPRDDELLLDYLRPKLDGQVYPK-GIVHDCDLYGLeEPSDIWRrlnrashdgH--EctDDKDIYIFTTLNSKAPNGSRFCRTvgTTGGTWK 101 599************************999.89*******9978****643565555542..03377899******************645779**** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ ++++g +k +++ ++ + +++ +W+mhe++l Pbr012882.1 102 GEDAGKKIYASgIKHAIGFRKRFTYRNKGS--PQNDHWIMHEFHL 144 *********9855677*********95444..459*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-30 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.661 | 7 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-16 | 8 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MAGYYQVPVG YRFMPRDDEL LLDYLRPKLD GQVYPKGIVH DCDLYGLEEP SDIWRRLNRA 60 SHDGHECTDD KDIYIFTTLN SKAPNGSRFC RTVGTTGGTW KGEDAGKKIY ASGIKHAIGF 120 RKRFTYRNKG SPQNDHWIMH EFHLDPSLLR NKHHQEKNIV LCILRRKDDI AKKRKLEERD 180 NYEENAANHF QPQALNAINV GDYNNAPTYM EQIAFDHSQP LALTTTTIGD YSNDPRYPEQ 240 NAANHFQPQK FDAATTGDYS NAHWYTKQNT ADHFEPHDEA HNATNEDLTT ALRRMEEILM 300 SGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-15 | 7 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-15 | 7 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-15 | 7 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-15 | 7 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-15 | 7 | 173 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-15 | 7 | 173 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012882.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370821.1 | 0.0 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A498KBK1 | 0.0 | A0A498KBK1_MALDO; Uncharacterized protein | ||||
STRING | XP_009370821.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62700.1 | 6e-21 | Arabidopsis NAC domain containing protein 26 |