PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr012679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 34789.2 Da PI: 7.7924 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.8e-08 | 106 | 127 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+ tG+C+ GdrC +aHg Pbr012679.1 106 ICPAFRSTGYCRKGDRCECAHG 127 7********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.04E-5 | 101 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.164 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-6 | 106 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-8 | 134 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.498 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.8 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MMQGVHPGYC YQLVDPSVYY SGLLRSPVQY QCQYHDPMLP VQYQSQYHDP MIDNAIFGSD 60 EFRMYAYKVK RCQRMGAHDW TNCPYAHRGE KAQRRDPRKF AYSAIICPAF RSTGYCRKGD 120 RCECAHGVFE YWLHPAKYRT RACASLENGY CPRKVCFFAH TPDELRPQHT YSGHKYYVAY 180 DQQAGFYPPY HYYKYQNNSD LCRAAPRTPK ANRGGGGVAT EAPWTAEEYQ TMMHNKKIVD 240 ESCLKVEEFL NSLRALKLSD YEMEYDQGEI DAACGMKSYG GGEASVSEMP QFDWINKLLQ 300 * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr012679.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370419.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A498JMM8 | 0.0 | A0A498JMM8_MALDO; Uncharacterized protein | ||||
STRING | XP_009370419.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14172 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-56 | C3H family protein |