PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012679.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 301aa    MW: 34789.2 Da    PI: 7.7924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012679.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.8e-08106127526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f+ tG+C+ GdrC +aHg
  Pbr012679.1 106 ICPAFRSTGYCRKGDRCECAHG 127
                  7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.04E-5101132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.164101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4101128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5106130IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6106127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-8134167IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.498137163IPR000571Zinc finger, CCCH-type
SMARTSM003560.8137162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMQGVHPGYC YQLVDPSVYY SGLLRSPVQY QCQYHDPMLP VQYQSQYHDP MIDNAIFGSD  60
EFRMYAYKVK RCQRMGAHDW TNCPYAHRGE KAQRRDPRKF AYSAIICPAF RSTGYCRKGD  120
RCECAHGVFE YWLHPAKYRT RACASLENGY CPRKVCFFAH TPDELRPQHT YSGHKYYVAY  180
DQQAGFYPPY HYYKYQNNSD LCRAAPRTPK ANRGGGGVAT EAPWTAEEYQ TMMHNKKIVD  240
ESCLKVEEFL NSLRALKLSD YEMEYDQGEI DAACGMKSYG GGEASVSEMP QFDWINKLLQ  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012679.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370419.10.0PREDICTED: zinc finger CCCH domain-containing protein 54
TrEMBLA0A498JMM80.0A0A498JMM8_MALDO; Uncharacterized protein
STRINGXP_009370419.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-56C3H family protein