PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 868aa MW: 96714.3 Da PI: 6.2853 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.7e-23 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ ++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l Pbr012651.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 228 99*****************************9666655.49************************************************..8889999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Pbr012651.1 229 FLGIRRA 235 ****997 PP | |||||||
2 | Auxin_resp | 119.4 | 2.9e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+v+YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Pbr012651.1 260 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-48 | 118 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-40 | 127 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-21 | 133 | 229 | No hit | No description |
SMART | SM01019 | 2.3E-23 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.238 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-21 | 134 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-34 | 260 | 343 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.152 | 724 | 825 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.65E-5 | 759 | 815 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MKLSASGLGQ QDHEGGGGGG GVEKKCLNSE LWHACAGPLV SLPTRGTRVV YFPQGHSDQV 60 AATTNKQVDA HLPNYPSLPP QLICQLHNVT MHADVETDEV YAQMTLQPLT PQEQKETFLP 120 MELGLPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTLQPP AQELIARDLH 180 DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLFL GIRRATRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSCF TVFYNPRASP SEFVIPLSKY IKAVFHTRVS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTFP MYPSLFPLRL KRPWYPGASS MHDNRDESNS LMWLRGGAVE QGLQSMNFQN 420 VGMFPWMQQR LDSTLIGNEH NQQYQAMLAA GSQNLGSGDQ LRQQMMHFQQ PFQYVQQSGI 480 HNPMLQLQQQ AIQQSIPHNI LQGQPQVSME NMPQHLLQQQ FNNQTDEQAQ QQQNAYQDAL 540 KVQNEQLHQS HQMNVSSPSF PKTDLSDSST KFSASTTPRQ NMLGTLCPDG SGNLLSMSRA 600 GHSMPTEQSP QQSWAPKYAH GQANAFANSM SFPPFNEKDS AVEQENLNSD THNPTLFGVN 660 IESSGLLFPT SAPSFATSSN DADISMPLGD SGLQSSLYGC MQDSSELLHS AGQVDPPTPN 720 NCTFVKCRFT SQGQLAAHWT YPXXXXXXXX XXXXXLCISR VSSYHELREE LGQMFGIEGK 780 LEDRLRSGWQ LVFVDREDDV LLLGDDPWES FVNNVWYIKI LSPEDVHKMG HQAVESFSPN 840 TGQRLNSSGG EGQDIVSGLP SLGSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 21 | 364 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012651.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370588.1 | 0.0 | PREDICTED: auxin response factor 8-like isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A498HAH8 | 0.0 | A0A498HAH8_MALDO; Auxin response factor | ||||
STRING | XP_009370588.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |