PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012489.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 417aa MW: 46544.8 Da PI: 5.5373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012489.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.4	5.2e-25	86	168	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++ +lW+++s++mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ Pbr012489.1 86 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISARMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 168 *****************************************************************997..56678***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.351	78	142	IPR017877	Myb-like domain
SMART	SM00717	0.0081	82	144	IPR001005	SANT/Myb domain
CDD	cd12203	5.58E-27	84	149	No hit	No description
Pfam	PF13837	4.0E-18	85	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MYHSEKPRAV DLYKGGGLEE TETEMMMEVA AVNGRAPPHH QNQNEREQQQ SSGGEGEEQE 60 LCAAVSSRAG GGPGGAAGPK KRAETWVQEE TRSLIGFRRE VDGLFNTSKS NRHLWDQISA 120 RMREKGFDRS PTMCTDKWRN LLKEFKKARH QVKVGARSAK MSYYEDLQDL LRDRTTNSNS 180 ATANSNHNSV SAAAAAVATP PKLDSFVRFS DKGLEDSTIP FGPMEANDRS ALNLERQLDH 240 DSGDPLAITA ADAVAVNGVP PWNWREGPEN GGEDHSSYCG RIITVKLGEY TRRIGIDGTG 300 EAIKEAIKSA FRIRTKRAFW LEDEDQVVRS LDRDMPLGNY TLHLDEGITI KLCLYDDSDR 360 IVRTEEITLY TEDDFRDFLA RRGLMGLREL SGYRRVDTLD DLHSGAMYQG VRLLVD*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MYHSEKPRAV DLYKGGGLEE TETEMMMEVA AVNGRAPPHH QNQNEREQQQ SSGGEGEEQE  60
LCAAVSSRAG GGPGGAAGPK KRAETWVQEE TRSLIGFRRE VDGLFNTSKS NRHLWDQISA  120
RMREKGFDRS PTMCTDKWRN LLKEFKKARH QVKVGARSAK MSYYEDLQDL LRDRTTNSNS  180
ATANSNHNSV SAAAAAVATP PKLDSFVRFS DKGLEDSTIP FGPMEANDRS ALNLERQLDH  240
DSGDPLAITA ADAVAVNGVP PWNWREGPEN GGEDHSSYCG RIITVKLGEY TRRIGIDGTG  300
EAIKEAIKSA FRIRTKRAFW LEDEDQVVRS LDRDMPLGNY TLHLDEGITI KLCLYDDSDR  360
IVRTEEITLY TEDDFRDFLA RRGLMGLREL SGYRRVDTLD DLHSGAMYQG VRLLVD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	7e-43	80	166	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012489.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370297.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-151	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A314URK4	0.0	A0A314URK4_PRUYE; Trihelix transcription factor GT-4-like
STRING	XP_009370297.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-141	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]