PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012205.3

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 691aa MW: 77220.4 Da PI: 5.558

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012205.3	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	84	106	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp Pbr012205.3 84 VPCIFFQK-GQCLKGDRCAFSHGP 106 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.268	17	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.76	19	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	1.8E-4	22	41	No hit	No description
PROSITE profile	PS50103	15.422	80	107	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-6	80	106	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	81	105	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-5	84	106	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	85	106	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MFLWGSECEY RHSEYARVNP RDCWYWLNGS CLNLKCAFRH PPLDGLLGSP AANSAGPSLP 60 LSHPVATPTT PATHAAFNPS KQAVPCIFFQ KGQCLKGDRC AFSHGPNPMA SSKVLQTPAA 120 AHGTEPSGLK KAFGGLQKCT QELKVPKVSA TKSVGVPPEA KPAPKFPTAP IRNGVSIERN 180 VPSTKALDDE ALRYKATSVP PVINGGSTSQ ANHLLQAHVS DYHGFQNGKD ADEHLRESSP 240 GFDVLVDDEH GDSDYYHGEE RFGRTRGHEG RNLNSVNEYD LDRPVDYTSM ADVDQERFFD 300 PYDPYDRMQG QYAWDQHRVS SERQLVGPAR LERRGYRKSE SPENIDELDL RHRLSKHRRV 360 NGLRSIVSHD YAVDGHVEER NNRPRRDSQQ LPPHEGSRSS RLHGRIKIPD GSSPVNGSDL 420 RQEREVDRAR SRGRLSPGRP QISSHQRRLR DRIKGRVEED YANERRNFGA SRVRGDIMDD 480 RGDDFSRPKR LPELKVVKDA ENKEQSYLGK RKSVMDNYQQ AEGDLSFEGP KPLSEILKRK 540 REAEAAASGS RKSSAHNKRG NNQRESRESD QGDSQTAVTE VNNSLPTAAK EEPKFATADA 600 VGTEDEKIDV VHGQSSEGHE AGEVEAEEGM IYEEENEIEG EDQREGEYDY EQGDEGDYNY 660 EGENAEGEEE YLEEDEDGDD FAKKIGVVFS *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MFLWGSECEY RHSEYARVNP RDCWYWLNGS CLNLKCAFRH PPLDGLLGSP AANSAGPSLP  60
LSHPVATPTT PATHAAFNPS KQAVPCIFFQ KGQCLKGDRC AFSHGPNPMA SSKVLQTPAA  120
AHGTEPSGLK KAFGGLQKCT QELKVPKVSA TKSVGVPPEA KPAPKFPTAP IRNGVSIERN  180
VPSTKALDDE ALRYKATSVP PVINGGSTSQ ANHLLQAHVS DYHGFQNGKD ADEHLRESSP  240
GFDVLVDDEH GDSDYYHGEE RFGRTRGHEG RNLNSVNEYD LDRPVDYTSM ADVDQERFFD  300
PYDPYDRMQG QYAWDQHRVS SERQLVGPAR LERRGYRKSE SPENIDELDL RHRLSKHRRV  360
NGLRSIVSHD YAVDGHVEER NNRPRRDSQQ LPPHEGSRSS RLHGRIKIPD GSSPVNGSDL  420
RQEREVDRAR SRGRLSPGRP QISSHQRRLR DRIKGRVEED YANERRNFGA SRVRGDIMDD  480
RGDDFSRPKR LPELKVVKDA ENKEQSYLGK RKSVMDNYQQ AEGDLSFEGP KPLSEILKRK  540
REAEAAASGS RKSSAHNKRG NNQRESRESD QGDSQTAVTE VNNSLPTAAK EEPKFATADA  600
VGTEDEKIDV VHGQSSEGHE AGEVEAEEGM IYEEENEIEG EDQREGEYDY EQGDEGDYNY  660
EGENAEGEEE YLEEDEDGDD FAKKIGVVFS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012205.3

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009351652.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A498HLM0	0.0	A0A498HLM0_MALDO; Uncharacterized protein
STRING	XP_009351652.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37