PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012170.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 493aa    MW: 54387.6 Da    PI: 8.7868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012170.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-066284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Pbr012170.1 62 YVCEICNQGFQRDQNLQMHRRRH 84
                 9*********************9 PP
2zf-C2H215.83.9e-05142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Pbr012170.1 142 WVCDKCSKGYAMQSDYKAHLKTC 164
                  58*******************98 PP
3zf-C2H210.80.0016172190523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr +++  H+ t+
  Pbr012170.1 172 DCGRVFSRVESFIEHQDTC 190
                  9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-56184No hitNo description
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355120106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-4133163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-5137162No hitNo description
SMARTSM0035562142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFDNTTTTNN NTAASCSAPP SSSSHENGGA THKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREIAEDQV IKKKVFVCPE PSCLHHDPRH  120
ALGDLVGIKK HFRRKHSNHK QWVCDKCSKG YAMQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC TVRHVVRPEL QTALQPAACS SRTASSTSPS SDANFSFSNN VAAPLVMAGL  240
PVRPNPTHHH DKRAGMNPYI SCNRQQQQQQ QHQQQHQQEV HNNILELQLL PSSNAHTSSP  300
PNLDESHATN LKLSIGSPSS DQLANEKNES SKYNSSSDIK RRRSSPGNEK NINNASAVGG  360
VGSTSELVRL KEFASEELKL AVAEKSYAED ARREAKRQIE MAEIEFANAK RIRQQAQAEV  420
EKALLLKEQA TKRISSAILQ ITCQACKQHF HIASAASTVA GGAVGRSDET SLAMSYMSSA  480
TTEGEGDHDH TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17140190555Zinc finger protein JACKDAW
5b3h_F5e-17140190555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351608.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X71e-145IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A498HG100.0A0A498HG10_MALDO; Uncharacterized protein
STRINGXP_009351608.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-141indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]