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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr012167.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
BBR-BPC |
Protein Properties |
Length: 291aa MW: 31966.9 Da PI: 10.0581 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr012167.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 341.1 | 2.7e-104 | 12 | 290 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd+ + rn+gyyep+ +k +l+lqlmss+aerd k+ r+ + + + ++a+++rd m++ +r++++++ ++k+l+++
Pbr012167.1 12 MDDDALNMRNWGYYEPS--FKGHLSLQLMSSMAERDIKPfapgRDPAV-MVSANGAYHPRDcvvsdaqlpMNY-MRESWVNQ--------RDKFLNMM 97
9***9999*******99..********************9*9999998.999*********999999999999.88899998........78999*99 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ a+p++ vl++t+ ++slq l+++ + e+ e++ + ke ++kkrq + pk++k kk++k +k++ +++s+
Pbr012167.1 98 P-------ANPNYAAVLPETSGAHSLQI-----LQPPEASRDERVGRM-----EEPVVPKEGGTSKKRQGGGAPKAPKVKKPRK----PKDN-ANPSV 173
9.......468899**********9999.....555554422322222.....2344556666677777778888888888777....3233.44443 PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
+r+k kks+d+v+ng+++D+s++P+PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++n
Pbr012167.1 174 -PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGVAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFAN 270
.79*********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DL++hWAkHGtnkfvt+r
Pbr012167.1 271 PIDLRSHWAKHGTNKFVTLR 290
******************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MFVCLAESVA LMDDDALNMR NWGYYEPSFK GHLSLQLMSS MAERDIKPFA PGRDPAVMVS 60 ANGAYHPRDC VVSDAQLPMN YMRESWVNQR DKFLNMMPAN PNYAAVLPET SGAHSLQILQ 120 PPEASRDERV GRMEEPVVPK EGGTSKKRQG GGAPKAPKVK KPRKPKDNAN PSVPRVKPAK 180 KSLDVVINGI NMDISGIPIP VCSCTGVAQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR 240 GARIAGRKMS QGAFKKVLEK LAAEGYNFAN PIDLRSHWAK HGTNKFVTLR *
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM244747 | 0.0 | KM244747.1 Malus hupehensis basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
GenBank | KP657685 | 0.0 | KP657685.1 Malus baccata basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |