PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012167.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 291aa    MW: 31966.9 Da    PI: 10.0581
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012167.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind341.12.7e-104122901301
    GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85 
                  mddd+ + rn+gyyep+  +k +l+lqlmss+aerd k+    r+  + + + ++a+++rd         m++ +r++++++        ++k+l+++
  Pbr012167.1  12 MDDDALNMRNWGYYEPS--FKGHLSLQLMSSMAERDIKPfapgRDPAV-MVSANGAYHPRDcvvsdaqlpMNY-MRESWVNQ--------RDKFLNMM 97 
                  9***9999*******99..********************9*9999998.999*********999999999999.88899998........78999*99 PP

    GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                  +       a+p++  vl++t+ ++slq      l+++ +   e+         e++ + ke  ++kkrq +  pk++k kk++k    +k++ +++s+
  Pbr012167.1  98 P-------ANPNYAAVLPETSGAHSLQI-----LQPPEASRDERVGRM-----EEPVVPKEGGTSKKRQGGGAPKAPKVKKPRK----PKDN-ANPSV 173
                  9.......468899**********9999.....555554422322222.....2344556666677777778888888888777....3233.44443 PP

    GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                   +r+k  kks+d+v+ng+++D+s++P+PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++n
  Pbr012167.1 174 -PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGVAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFAN 270
                  .79*********************************************************************************************** PP

    GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                  p+DL++hWAkHGtnkfvt+r
  Pbr012167.1 271 PIDLRSHWAKHGTNKFVTLR 290
                  ******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.2E-11312290IPR010409GAGA-binding transcriptional activator
SMARTSM012261.8E-17712290IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MFVCLAESVA LMDDDALNMR NWGYYEPSFK GHLSLQLMSS MAERDIKPFA PGRDPAVMVS  60
ANGAYHPRDC VVSDAQLPMN YMRESWVNQR DKFLNMMPAN PNYAAVLPET SGAHSLQILQ  120
PPEASRDERV GRMEEPVVPK EGGTSKKRQG GGAPKAPKVK KPRKPKDNAN PSVPRVKPAK  180
KSLDVVINGI NMDISGIPIP VCSCTGVAQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR  240
GARIAGRKMS QGAFKKVLEK LAAEGYNFAN PIDLRSHWAK HGTNKFVTLR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2447470.0KM244747.1 Malus hupehensis basic pentacysteine 1 protein (BPC1) mRNA, complete cds.
GenBankKP6576850.0KP657685.1 Malus baccata basic pentacysteine 1 protein (BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501957.10.0PREDICTED: protein BASIC PENTACYSTEINE2 isoform X1
SwissprotQ9SKD01e-113BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A498HKG40.0A0A498HKG4_MALDO; Uncharacterized protein
STRINGXP_008348741.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-113basic pentacysteine 2