PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012152.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 259aa    MW: 28145 Da    PI: 6.7893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012152.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002497119123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C++ F ++  L  H++ H
  Pbr012152.1  97 FSCNYCKRKFYSSQALGGHQNAH 119
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-792125No hitNo description
PROSITE profilePS5015711.40697124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLTQNLNLEF ENNSEVTNQV TSNVPLQEES PDASKDSTTT SSCLTNQTNH QQQDPGPVSL  60
DLTLQFCSSD VELKGTGETS SETAAPPTSE GTNPRVFSCN YCKRKFYSSQ ALGGHQNAHK  120
RERTMAKRAM RMGMFTDRYT SLASLPLHGS AASAFRSLGI QAHSAVHQNT MVSSDHPRFP  180
VPDTRGVARF QHGYFGVPVF MDEDDEGMFW PGSFRQVGKG VGGHYNVQSA QNPNMNSGTS  240
MAPRNNTSSS SPDLTLKL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012152.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351582.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392634e-45ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A498HLH11e-173A0A498HLH1_MALDO; Uncharacterized protein
STRINGXP_009351582.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-47zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]