PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011987.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 732aa    MW: 83598.2 Da    PI: 6.9217
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011987.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.3e-2053146190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  Pbr011987.1  53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 146
                  6***************9998874556679*******************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1753146IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23269361IPR018289MULE transposase domain
PROSITE profilePS509669.681533581IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-6555579IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-5556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSM STDDKSRICM FAKAGMSVRQ  180
MLRLMEMEKG VKLGCLPFTE IDVRNLLQSF RNVNRDNDAI DLIAMCKKMK DESPNFKYEF  240
KIDGHNRLEH IAWSYSSSVH LYEEFGDSVV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG  300
CALLRDENMQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAVAIEMPRS KHAFCIWHIV  360
AKFSDWFSVL LGPRYDDWKA EFHQLFNLDL AEDFEDRWRE MVNEYGLQAN KHVISLYALR  420
NFWALAYLRN YFFAGIMSTS QSESINAFIQ RFLSAQSQLD RFVEQAADVV DYNDRVGAKQ  480
KIERKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVSA PQYASLAVDE GCFQVRHHTE  540
ADGGCKVVWI PCQEHISCTC YQFEFSGILC RHVLRVLSTN NCFHIPNQYL PTRWCSVSSS  600
STNTFETATI TDNSEKIQLL ESMASTLITE SVETEERLNA ACEQIAMVLS RIKDLPRTTH  660
NAINIAYNCP SDSLILPDVE DHGDGIVRFT IGNSHESVTI GKLKERRPRD MVEISKKRRH  720
CSGPCCLSVQ Q*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011987.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369962.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_009369963.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A251QZE30.0A0A251QZE3_PRUPE; Uncharacterized protein
STRINGXP_009369962.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]