PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011973.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 915aa MW: 102963 Da PI: 7.1159

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011973.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.2	1.9e-50	30	144	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n++ ++++l++ + pksg+++L++rk +r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcyw Pbr011973.1 30 EAKSRWLRPNEIHAILYNYKYFTVHLKPVNLPKSGTIVLFDRKLLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERVHVYYAHGEDSPTFVRRCYW 127 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylev 117 lL+++le+ivlvhy+e+ Pbr011973.1 128 LLDKSLEHIVLVHYRET 144 *************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.92	24	150	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.4E-71	28	145	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.7E-45	30	143	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.1E-6	364	456	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.5E-14	366	453	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.0E-5	367	452	IPR002909	IPT domain
CDD	cd00204	1.12E-12	526	660	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.3E-15	550	663	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	9.9E-7	563	630	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.03E-15	563	663	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.035	568	660	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.621	601	633	IPR002110	Ankyrin repeat
SMART	SM00248	9.2E-6	601	630	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.98	749	775	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	42	764	786	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.87	765	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.097	787	809	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.743	788	812	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0023	790	809	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	19	867	889	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.602	869	897	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MHSTFGEQPS CWLSSYNESS DLDVATTMEE AKSRWLRPNE IHAILYNYKY FTVHLKPVNL 60 PKSGTIVLFD RKLLRNFRKD GHNWKKKNDG KTVKEAHEHL KVGNEERVHV YYAHGEDSPT 120 FVRRCYWLLD KSLEHIVLVH YRETREGSPV TPVNSNSSSV SDPSAPSSLS EEHDSVANNA 180 YCAGENELQE LGDGLTVNNH EQRLHDINTL EWDELLVKND SKGDNISGYD QQNQVVGNGS 240 ISGGASSLSA EISSFGNLTN LTAGSENIQF NLSGTPCVET LLGDVNSNVQ RRDFIAKATC 300 GSVDVLHNNG LHSQDSFGRW INQIMTESTA SVEDPVLDCS FSAAQNSFAS PTMDHLQSSV 360 PQQIFNITDI SPTWAFSNEK TKILITGFLH QEFFQLAKSD LLCVCGDVCL PAEIVQAGVY 420 RCFVPPHSPR VVNLFMSIDG HKPISQELNF EYRAPVLSDT LVSSEGNKRE EFQVQMRLAY 480 LLFSSSHSLN IISSKVPPNA LKEAKKFSHR TSHMSNHWPY LMKAVEDNKT PLPLAKDSLF 540 ELILKNRLKD WLLEKVVQVS KTKEYDAHGL GVIHLCAILE YTWAVRLFSW SGLSLDFRDR 600 RGWTALHWAA YCGREKMVAV LLSAGAKPNL VTDPTPDNPG GSTAADFASM KGYDGLAAYL 660 SEKALVEQFN AMSVAGNVSG SLEISSSYAA NSENLSEEDL YLKDTLAAYR TTADAAARIQ 720 AAFRENSLKQ KTKAVQYSTP EAEARGIIAA LKIQHAFRNY ETKKKIQAAA RIQYRFRTWK 780 MRQDFLSLRR QTIKIQAAFR GFQVRRQYRK VLWSVGVLEK AVLRWRFKRR GLRGLNVAPA 840 EVSVDQVQES DTEEDFYRAS QKQAEERVER SVIRVQAMFR SKKAQEEYAR MKMAHNQATL 900 EFDDFLDPDA IMDN*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MHSTFGEQPS CWLSSYNESS DLDVATTMEE AKSRWLRPNE IHAILYNYKY FTVHLKPVNL  60
PKSGTIVLFD RKLLRNFRKD GHNWKKKNDG KTVKEAHEHL KVGNEERVHV YYAHGEDSPT  120
FVRRCYWLLD KSLEHIVLVH YRETREGSPV TPVNSNSSSV SDPSAPSSLS EEHDSVANNA  180
YCAGENELQE LGDGLTVNNH EQRLHDINTL EWDELLVKND SKGDNISGYD QQNQVVGNGS  240
ISGGASSLSA EISSFGNLTN LTAGSENIQF NLSGTPCVET LLGDVNSNVQ RRDFIAKATC  300
GSVDVLHNNG LHSQDSFGRW INQIMTESTA SVEDPVLDCS FSAAQNSFAS PTMDHLQSSV  360
PQQIFNITDI SPTWAFSNEK TKILITGFLH QEFFQLAKSD LLCVCGDVCL PAEIVQAGVY  420
RCFVPPHSPR VVNLFMSIDG HKPISQELNF EYRAPVLSDT LVSSEGNKRE EFQVQMRLAY  480
LLFSSSHSLN IISSKVPPNA LKEAKKFSHR TSHMSNHWPY LMKAVEDNKT PLPLAKDSLF  540
ELILKNRLKD WLLEKVVQVS KTKEYDAHGL GVIHLCAILE YTWAVRLFSW SGLSLDFRDR  600
RGWTALHWAA YCGREKMVAV LLSAGAKPNL VTDPTPDNPG GSTAADFASM KGYDGLAAYL  660
SEKALVEQFN AMSVAGNVSG SLEISSSYAA NSENLSEEDL YLKDTLAAYR TTADAAARIQ  720
AAFRENSLKQ KTKAVQYSTP EAEARGIIAA LKIQHAFRNY ETKKKIQAAA RIQYRFRTWK  780
MRQDFLSLRR QTIKIQAAFR GFQVRRQYRK VLWSVGVLEK AVLRWRFKRR GLRGLNVAPA  840
EVSVDQVQES DTEEDFYRAS QKQAEERVER SVIRVQAMFR SKKAQEEYAR MKMAHNQATL  900
EFDDFLDPDA IMDN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	86	RKLLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011973.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018505906.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A498IFY7	0.0	A0A498IFY7_MALDO; Uncharacterized protein
STRING	XP_009369951.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]