PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011544.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 549aa    MW: 60184.3 Da    PI: 7.7981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011544.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33226283260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Pbr011544.2 226 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 283
                  8****************************************.***************85 PP
2WRKY36.21.2e-11397419123
                  ---SS-EEEEEEE--TT-SS-EE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                  ldDgy+WrKYGqK+vkg+++pr 
  Pbr011544.2 397 LDDGYRWRKYGQKVVKGNPNPRE 419
                  59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28217284IPR003657WRKY domain
SuperFamilySSF1182901.83E-25224284IPR003657WRKY domain
SMARTSM007749.2E-37225283IPR003657WRKY domain
PROSITE profilePS5081123.893226284IPR003657WRKY domain
PfamPF031061.2E-25226282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-13382419IPR003657WRKY domain
SuperFamilySSF1182902.09E-9389418IPR003657WRKY domain
PROSITE profilePS5081115.698392418IPR003657WRKY domain
SMARTSM007741.2E-4397448IPR003657WRKY domain
PfamPF031064.3E-7398419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MASSSGSLET SANSHPAAFT FSTHPFMTTS FSDLLASGTN EDSNPPRYIG HGGLSDRIAE  60
RTGSGVPKFK SLPPPSLPIS PPSISPSSYF AIPPGLSPAE LLDSPVLLNT SNILPSPTTG  120
SLAAHGAFNW KNNQQNVKQE SKNYSDFSFQ TQARPPISSS SSMFQSSNTS NQTAWNNYVQ  180
AQEPPKQEYG SVQSLPSEMT TQTLQNNTPT NGGFYHQSQT LSRKSDDGYN WRKYGQKQVK  240
GSENPRSYYK CTYPNCPTKK KVERSLDGQI TEIVYKGNHN HPKPQNTRRS SSNSHAIPAS  300
DATNNELPDQ TYANHGNSQM DSIGTPENSS ISIGDDDFEQ SSQRSKSGGG EEFDEDEPNA  360
KKWKKDADHN EGISAPGGRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPREA  420
QPRRPRRSWQ GGPQWXXXXX GGSHAAANRP IPNNNNNNNN VASAMRPITY HINNSANTNS  480
LQNLRQPTSE GQAPFTGLEM LQSQGTYGFA GFDGNSMGYM NQAQLSDNMF SKAKEEPRDD  540
AFFESLLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-16217284674WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011544.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505811.10.0PREDICTED: probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-109WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A498IU590.0A0A498IU59_MALDO; Uncharacterized protein
STRINGXP_009369525.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.15e-75WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]