PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011525.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 289aa MW: 30542.6 Da PI: 5.0832

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011525.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	169	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Pbr011525.1 169 SHSLAERARREKISERMKILQDLVPGC----NKVIGKAIVLDEIINYIQSLQ 216 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-18	163	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-10	163	220	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-18	165	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.834	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-8	169	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-11	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDPPLINESP FSAANPASYS LAEIWPFSGE PGGNGGGLGL RMGNLGQSLG GPGDSSVNRD 60 GSLEESTVTE QSGGGGGGGG GGRKRRDVSS EDESSKQVST SSGNGLNDSG GKRMKLAGSS 120 NENGSLRAEV EESSAAGDNK PAEESTKPSE PPKQDFIHVR ARRGQATDSH SLAERARREK 180 ISERMKILQD LVPGCNKVIG KAIVLDEIIN YIQSLQHQVE FLSMKLEAVN SRMNMNPTIE 240 AFPPKDLGAQ PFDAAGLLFG SHTQREYAQS SQPEWLHMQV GGSFERTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011525.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369387.1	0.0	PREDICTED: transcription factor bHLH79-like
Refseq	XP_018505785.1	0.0	PREDICTED: transcription factor bHLH79-like
Swissprot	Q9LV17	3e-94	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A498JMM1	1e-168	A0A498JMM1_MALDO; Uncharacterized protein
STRING	XP_009369387.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	7e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]