PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011460.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 109aa    MW: 12158.7 Da    PI: 6.9576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011460.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.1e-0520741554
                 HHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksL 54
                 +i++   +L+ llP++                  + + +s ++iLe+++ YIk L
  Pbr011460.1 20 EIKELVLKLQPLLPQLHhsrnapgfitndtltVSNFTQVSASSILEETCSYIKRL 74
                 566666677777777556888888888888887777899**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.083574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-61989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-61988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSSRRSSSSS SRASKPLDDE IKELVLKLQP LLPQLHHSRN APGFITNDTL TVSNFTQVSA  60
SSILEETCSY IKRLHREVED LSKRLSQLLD SAGITDVDEE LIRTLLRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011460.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393138.21e-39transcription factor PRE6-like
TrEMBLA0A498I2Z44e-35A0A498I2Z4_MALDO; Uncharacterized protein
STRINGXP_008367547.18e-39(Malus domestica)
STRINGXP_008393138.18e-39(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-14bHLH family protein