PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011427.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 466aa MW: 50958.7 Da PI: 6.0357

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011427.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.4e-40	124	184	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Pbr011427.1 124 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 184 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	114	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MLETKDPAIK LFGKKIALPA DIDDLGFARP VEKEVEVESE EEDEEEEDAE TEQDSPSRKS 60 TESIEQDDGS PPKTEDPANL EILPDSNVNP KTPSTDEESA QSKTAQTEKE PSTENSEEKT 120 LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN 180 KNSASHYRHF TITEALQAAR IDAPNGAHHP PLKSNGRVLS FGVDAPICDP MASVLNLADK 240 NVSSSTRNGL HKGEEQVFQA PCKSRENGDD SSSASSVNVS KAHLQNVNGF SSQIPCLPGV 300 LWPYPWNAAV PPPAFCPPGF PLSFCPAPYW NCGVPGTWNV PWFGPQPPSP NQKSPHSSSN 360 SPTLGKHSRD EDVVRPENMD KQEPSRQKNG CVLVPKTLRI DDPSEAAKSS IWATLGIKND 420 SISGKGLFKA FQPKSDQKKI VPETSPAMRA NPAALSRSLN FHESS*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MLETKDPAIK LFGKKIALPA DIDDLGFARP VEKEVEVESE EEDEEEEDAE TEQDSPSRKS  60
TESIEQDDGS PPKTEDPANL EILPDSNVNP KTPSTDEESA QSKTAQTEKE PSTENSEEKT  120
LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN  180
KNSASHYRHF TITEALQAAR IDAPNGAHHP PLKSNGRVLS FGVDAPICDP MASVLNLADK  240
NVSSSTRNGL HKGEEQVFQA PCKSRENGDD SSSASSVNVS KAHLQNVNGF SSQIPCLPGV  300
LWPYPWNAAV PPPAFCPPGF PLSFCPAPYW NCGVPGTWNV PWFGPQPPSP NQKSPHSSSN  360
SPTLGKHSRD EDVVRPENMD KQEPSRQKNG CVLVPKTLRI DDPSEAAKSS IWATLGIKND  420
SISGKGLFKA FQPKSDQKKI VPETSPAMRA NPAALSRSLN FHESS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011427.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369285.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-117	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	D9ZIX9	0.0	D9ZIX9_MALDO; DOF domain class transcription factor
STRING	XP_009369285.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-110	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]