PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011423.3
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 375aa    MW: 41995.3 Da    PI: 6.7934
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011423.3genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.4e-231053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+
  Pbr011423.3 10 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 53
                 67999*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.848161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-23261IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-211256IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRVKLKIKK LESSGNRQVT FSKRRNGILK KAKELSILCD VDIVLLMFSP TGRPTLFQGE  60
RRDYFKVRAI NSAGEGKELT ICPFVSNRKL ESLEVLKKTF KKLDHDVNVQ DFMSSSSQTV  120
QDLTHQVMVL QAQLTELHRR LSLWSDPDKV DNLEQLRQME DMLKESINRT RLHKFQNGMP  180
PSFLVGGSQE AQHITWLFNG DNQHMILPNE QNYLPHRGVE CSTNSTVPHY TNYFGTGTST  240
SSSTGKQSEA GDPLQLDTMG QISNMEGGGG FNGFDINACL STESGEHYAY PTYCSSNVPD  300
DKKVKPENEM NIPANPVDYQ LSSNFELPRS LYENDHHAWL SSPGPSGIAV YKENTYQPVS  360
IPSIDVFHSV LASL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011423.3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369280.10.0PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A498JNB80.0A0A498JNB8_MALDO; Uncharacterized protein
STRINGXP_009369280.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-77AGAMOUS-like 65